diff lib.r @ 14:e98ca7f0dcbd draft

planemo upload commit 2761472c8afc41d54cecd54cabd1c5a5713514a3-dirty
author lecorguille
date Fri, 22 Apr 2016 08:36:37 -0400
parents c02d80efba80
children 77a191e37af4
line wrap: on
line diff
--- a/lib.r	Sun Apr 17 16:36:55 2016 -0400
+++ b/lib.r	Fri Apr 22 08:36:37 2016 -0400
@@ -6,8 +6,8 @@
   pdfEicOutput = paste(new_file_path,filebase,"-eic_visible_pdf",sep="")
   pdfBoxOutput = paste(new_file_path,filebase,"-box_visible_pdf",sep="")
 
-  system(paste("convert ",filebase,"_eic/*.png ",filebase,"_eic.pdf",sep=""))
-  system(paste("convert ",filebase,"_box/*.png ",filebase,"_box.pdf",sep=""))
+  system(paste("gm convert ",filebase,"_eic/*.png ",filebase,"_eic.pdf",sep=""))
+  system(paste("gm convert ",filebase,"_box/*.png ",filebase,"_box.pdf",sep=""))
 
   file.copy(paste(filebase,"_eic.pdf",sep=""), pdfEicOutput)
   file.copy(paste(filebase,"_box.pdf",sep=""), pdfBoxOutput)