diff abims_CAMERA_annotateDiffreport.xml @ 14:e98ca7f0dcbd draft

planemo upload commit 2761472c8afc41d54cecd54cabd1c5a5713514a3-dirty

--- a/abims_CAMERA_annotateDiffreport.xml	Sun Apr 17 16:36:55 2016 -0400
+++ b/abims_CAMERA_annotateDiffreport.xml	Fri Apr 22 08:36:37 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.1.3">
+<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.1.5">
 
     <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description>
     
@@ -146,7 +146,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <!--<test>
             <param name="image" value="xset.group.retcor.group.fillPeaks.RData"/>
             <param name="convert_param" value="False"/>
             <param name="num_digits" value="0"/>
@@ -179,6 +179,40 @@
             <param name="zip_file" value="sacuri_dir_root.zip"  ftype="zip" />
             <output name="variableMetadata" file="xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
             <output name="datamatrix" file="xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" />
+        </test>-->
+        <test>
+            <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/>
+            <param name="convert_param" value="False"/>
+            <param name="num_digits" value="0"/>
+            <param name="sigma" value="6"/>
+            <param name="perfwhm" value="0.6"/>
+            <param name="maxcharge" value="3"/>
+            <param name="maxiso" value="4"/>
+            <param name="minfrac" value="0.5"/>
+            <param name="ppm" value="5"/>
+            <param name="mzabs" value="0.015"/>
+            <param name="intval" value="into"/>
+            <param name="max_peaks" value="100"/>
+            <param name="quick_block|quick" value="FALSE"/>
+            <param name="quick_block|polarity" value="negative"/>
+            <param name="quick_block|cor_eic_th" value="0.75"/>
+            <param name="quick_block|graphMethod" value="hcs"/>
+            <param name="quick_block|pval" value="0.05"/>
+            <param name="quick_block|calcCiS" value="True"/>
+            <param name="quick_block|calcIso" value="False"/>
+            <param name="quick_block|calcCaS" value="False"/>
+            <param name="quick_block|multiplier" value="3"/>
+            <param name="options|option" value="show"/>
+            <param name="options|eicmax" value="200"/>
+            <param name="options|eicwidth" value="200"/>
+            <param name="options|value" value="into"/>
+            <param name="options|h" value="480"/>
+            <param name="options|w" value="640"/>
+            <param name="options|mzdec" value="2"/>
+            <param name="options|sortpval" value="False"/>
+            <param name="zip_file" value="faahKO_reduce.zip"  ftype="zip" />
+            <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
+            <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" />
         </test>
     </tests>
     
@@ -364,7 +398,17 @@
 Changelog/News
 --------------
 
-**Version  2.1.3 - 10/02/2016**
+**Version 2.1.5 - 21/04/2016**
+
+- UPGRADE: upgrate the CAMERA version from 1.22.0 to 1.26.0
+
+
+**Version 2.1.4 - 18/04/2016**
+
+- TEST: refactoring to pass planemo test using conda dependencies
+
+
+**Version 2.1.3 - 10/02/2016**
 
 - BUGFIX: better management of errors. Datasets remained green although the process failed