diff planemo_test.sh @ 15:77a191e37af4 draft

planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b

--- a/planemo_test.sh	Fri Apr 22 08:36:37 2016 -0400
+++ b/planemo_test.sh	Mon Apr 25 11:06:59 2016 -0400
@@ -1,3 +1,10 @@
+# Example of planemo command to launch test
+
+# Note: --galaxy_branch "dev" is set to deal with zip file
+
+
+# -- Use of installed package environments
+# after having installing package on a local galaxy instance
 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh
 planemo test --install_galaxy --galaxy_branch "dev"
@@ -6,6 +13,16 @@
 #abims_CAMERA_annotateDiffreport[0]: passed
 
 
+# -- Use of conda dependencies
+planemo conda_init --conda_prefix /tmp/mc
+planemo conda_install --conda_prefix /tmp/mc . 
+planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev"
+
+#All 1 test(s) executed passed.
+#abims_CAMERA_annotateDiffreport[0]: passed
+
+
+# -- Use of shed_test
 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev"
 
 #All 1 test(s) executed passed.