Mercurial > repos > lecorguille > camera_annotate
comparison planemo_test.sh @ 15:77a191e37af4 draft
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:06:59 -0400 |
| parents | e98ca7f0dcbd |
| children | af2d29943e97 |
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| 14:e98ca7f0dcbd | 15:77a191e37af4 |
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| 1 # Example of planemo command to launch test | |
| 2 | |
| 3 # Note: --galaxy_branch "dev" is set to deal with zip file | |
| 4 | |
| 5 | |
| 6 # -- Use of installed package environments | |
| 7 # after having installing package on a local galaxy instance | |
| 1 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh | 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh |
| 2 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh | 9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh |
| 3 planemo test --install_galaxy --galaxy_branch "dev" | 10 planemo test --install_galaxy --galaxy_branch "dev" |
| 4 | 11 |
| 5 #All 1 test(s) executed passed. | 12 #All 1 test(s) executed passed. |
| 6 #abims_CAMERA_annotateDiffreport[0]: passed | 13 #abims_CAMERA_annotateDiffreport[0]: passed |
| 7 | 14 |
| 8 | 15 |
| 16 # -- Use of conda dependencies | |
| 17 planemo conda_init --conda_prefix /tmp/mc | |
| 18 planemo conda_install --conda_prefix /tmp/mc . | |
| 19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" | |
| 20 | |
| 21 #All 1 test(s) executed passed. | |
| 22 #abims_CAMERA_annotateDiffreport[0]: passed | |
| 23 | |
| 24 | |
| 25 # -- Use of shed_test | |
| 9 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev" | 26 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev" |
| 10 | 27 |
| 11 #All 1 test(s) executed passed. | 28 #All 1 test(s) executed passed. |
| 12 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed | 29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed |