Mercurial > repos > lecorguille > camera_annotate
comparison lib.r @ 22:65e3e1a39e16 draft
planemo upload commit 23ad0382ec59d66220fd94684a6d158fdef2c7f5-dirty
| author | lecorguille |
|---|---|
| date | Fri, 22 Jul 2016 11:25:17 -0400 |
| parents | 339d92b2c503 |
| children | 2a4a811c663d |
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| 21:339d92b2c503 | 22:65e3e1a39e16 |
|---|---|
| 43 listArguments4annotate = append(listArguments4annotate, | 43 listArguments4annotate = append(listArguments4annotate, |
| 44 list(multiplier=listArguments[["multiplier"]])) | 44 list(multiplier=listArguments[["multiplier"]])) |
| 45 } | 45 } |
| 46 # ruleset | 46 # ruleset |
| 47 else { | 47 else { |
| 48 rulset=read.table(listArguments[["rules"]], h=T, sep=",") | 48 rulset=read.table(listArguments[["rules"]], h=T, sep=";") |
| 49 if (ncol(rulset) < 4) rulset=read.table(listArguments[["rules"]], h=T, sep="\t") | |
| 50 if (ncol(rulset) < 4) rulset=read.table(listArguments[["rules"]], h=T, sep=",") | |
| 51 if (ncol(rulset) < 4) { | |
| 52 error_message="Your ruleset file seems not well formatted. The column separators accepted are ; , and tabulation" | |
| 53 print(error_message) | |
| 54 stop(error_message) | |
| 55 } | |
| 56 | |
| 49 listArguments4annotate = append(listArguments4annotate, | 57 listArguments4annotate = append(listArguments4annotate, |
| 50 list(rules=rulset)) | 58 list(rules=rulset)) |
| 51 } | 59 } |
| 52 } | 60 } |
| 53 | 61 |