Mercurial > repos > lecorguille > camera_annotate

comparison abims_CAMERA_annotateDiffreport.xml @ 37:636e36a64d31 draft

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planemo upload commit a5f400649acb64e1c66a92379027ac5abdb4f546
author lecorguille
date Tue, 09 Apr 2019 11:36:39 -0400
parents b6a8143c397c
children 2184c0435edf
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36:b6a8143c397c 37:636e36a64d31
198 <data name="output_diffreport_box_zip" format="zip" label="${image.name[:-6]}.annotateDiffreport_box.zip" from_work_dir="box.zip" > 198 <data name="output_diffreport_box_zip" format="zip" label="${image.name[:-6]}.annotateDiffreport_box.zip" from_work_dir="box.zip" >
199 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['png2'] == 'zip'</filter> 199 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['png2'] == 'zip'</filter>
200 </data> 200 </data>
201 <collection name="output_diffreport_picture_pdf" type="list" label="${image.name[:-6]}.annotateDiffreport.pdf"> 201 <collection name="output_diffreport_picture_pdf" type="list" label="${image.name[:-6]}.annotateDiffreport.pdf">
202 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['png2'] == 'pdf'</filter> 202 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['png2'] == 'pdf'</filter>
203 <discover_datasets pattern="__designation_and_ext__" directory="pdf" format="pdf" visible="true" /> 203 <discover_datasets pattern="__designation_and_ext__" directory="pdf" format="pdf" />
204 </collection> 204 </collection>
205 205
206 <data name="output_diffreport_table_zip" format="zip" label="${image.name[:-6]}.annotateDiffreport.pdf" from_work_dir="tabular.zip"> 206 <data name="output_diffreport_table_zip" format="zip" label="${image.name[:-6]}.annotateDiffreport_table.pdf" from_work_dir="tabular.zip">
207 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['tabular2'] == 'zip'</filter> 207 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['tabular2'] == 'zip'</filter>
208 </data> 208 </data>
209 <collection name="output_diffreport_table_collection" type="list" label="${image.name[:-6]}.annotateDiffreport_table"> 209 <collection name="output_diffreport_table_collection" type="list" label="${image.name[:-6]}.annotateDiffreport_table">
210 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['tabular2'] == 'datasetcollection'</filter> 210 <filter>diffreport['options']['option'] == 'show' and diffreport['options']['tabular2'] == 'datasetcollection'</filter>
211 <discover_datasets pattern="__designation_and_ext__" directory="tabular" format="tabular" visible="true" /> 211 <discover_datasets pattern="__designation_and_ext__" directory="tabular" format="tabular" />
212 </collection> 212 </collection>
213 </outputs> 213 </outputs>
214 214
215 <tests> 215 <tests>
216 <!--<test> 216 <!--<test>
440 --------------------------------------------------- 440 ---------------------------------------------------
441 441
442 Changelog/News 442 Changelog/News
443 -------------- 443 --------------
444 444
445 **Version 2.2.5 - 01/02/2019** 445 .. _News: https://bioconductor.org/packages/release/bioc/news/CAMERA/NEWS
446
447 **Version 2.2.5 - 09/04/2019**
446 448
447 - NEW: zip export are back for pictures (eic and boxplot) and diffreport tables 449 - NEW: zip export are back for pictures (eic and boxplot) and diffreport tables
450 - UPGRADE: upgrade the CAMERA version from 1.34.0 to 1.38.1 (see CAMERA News_)
448 451
449 **Version 2.2.4 - 09/10/2018** 452 **Version 2.2.4 - 09/10/2018**
450 453
451 - NEW: CAMERA.annotate no longer export a DataMatrix. fillChromPeaks does the job 454 - NEW: CAMERA.annotate no longer export a DataMatrix. fillChromPeaks does the job
452 455