Mercurial > repos > lecorguille > camera_annotate
comparison CAMERA_annotateDiffreport.r @ 40:3d943f088143 draft
"planemo upload commit 4fcbbcbc6d6b0a59e801870d31fe886a920ef429"
| author | workflow4metabolomics |
|---|---|
| date | Thu, 13 Feb 2020 22:22:06 +0000 |
| parents | db9bc2c27a0a |
| children | 7f4ae4db39eb |
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| 39:db9bc2c27a0a | 40:3d943f088143 |
|---|---|
| 43 zipfile = rawFilePath$zipfile | 43 zipfile = rawFilePath$zipfile |
| 44 singlefile = rawFilePath$singlefile | 44 singlefile = rawFilePath$singlefile |
| 45 args = rawFilePath$args | 45 args = rawFilePath$args |
| 46 directory = retrieveRawfileInTheWorkingDirectory(singlefile, zipfile) | 46 directory = retrieveRawfileInTheWorkingDirectory(singlefile, zipfile) |
| 47 | 47 |
| 48 | |
| 48 # Because so far CAMERA isn't compatible with the new XCMSnExp object | 49 # Because so far CAMERA isn't compatible with the new XCMSnExp object |
| 49 if (exists("xdata")){ | 50 if (exists("xdata")){ |
| 50 xset <- getxcmsSetObject(xdata) | 51 xset <- getxcmsSetObject(xdata) |
| 51 } | 52 } |
| 52 | 53 |