Mercurial > repos > kpbioteam > minfi_rset

view minfi_rset.xml @ 3:ed787a9a3753 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/kpbioteam/minfi_rset commit d43c3e67fa72ca39cbd67d33b010ebed8e7420bf-dirty
author kpbioteam
date Tue, 22 May 2018 10:09:59 -0400
parents 68e80e06e67b
children
line wrap: on
line source

<tool id="minfi_rset" name="minfi_rset" version="0.1.0">
    <description>store Beta values and/or M values</description>
    <requirements>
        <requirement type="package" version="1.24.0">bioconductor-minfi</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript  ${__tool_directory__}/minfi_rset.R  "$input1"   "$output1"
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="rdata" label="Methylation Signals" />
    </inputs>
    <outputs>
        <data name="output1" format="rdata" label="RatioSet"/>
    </outputs>
    <tests>
        <test>
            <param name="input1" value="MSet.rdata"/>
            <output name="output1" file="RSet.rdata"/>
        </test>
    </tests>
    <help><![CDATA[
        RSet objects contains respectively the Beta value matrix, M value matrix and the Copy Number matrix.
    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btu049</citation>
    </citations>
</tool>