Mercurial > repos > kpbioteam > minfi_getbeta

changeset 1:8bc3e950468b draft

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planemo upload commit 44d44bee0ad74081921d6c3e74a6231ed3e9c125
author kpbioteam
date Tue, 29 May 2018 10:06:53 -0400
parents ab291e211089
children 7cdf1fc2e8f6
files README.md minfi_getbeta.xml test.Rmd
diffstat 3 files changed, 10 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Tue May 29 10:06:53 2018 -0400
@@ -0,0 +1,1 @@
+# Tool return Beta value matrix in txt format
--- a/minfi_getbeta.xml	Mon Feb 05 08:51:35 2018 -0500
+++ b/minfi_getbeta.xml	Tue May 29 10:06:53 2018 -0400
@@ -7,10 +7,10 @@
         Rscript  ${__tool_directory__}/minfi_getbeta.R  "$input1" "$output1"
     ]]></command>
     <inputs>
-        <param type="data" name="input1" format="rdata" />
+        <param type="data" name="input1" format="rdata" label="MethylSet"/>
     </inputs>
     <outputs>
-        <data name="output1" format="txt" />
+        <data name="output1" format="txt" label="Beta Value Matrix"/>
     </outputs>
     <tests>
         <test>
@@ -24,4 +24,4 @@
     <citations>
         <citation type="doi">10.1093/bioinformatics/btu049</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test.Rmd	Tue May 29 10:06:53 2018 -0400
@@ -0,0 +1,6 @@
+---
+title: "An example Knitr/R Markdown document"
+author: "Kpbioteam"
+date: "23 Feb 2018"
+output: html_document
+---