# HG changeset patch
# User kpbioteam
# Date 1529598338 14400
# Node ID 49ae9762eb962a4d07375f2c8001c63753ab9e66
# Parent  5aba765e27b4684dbd4805588972f613985f8493
planemo upload for repository https://github.com/kpbioteam/clusterProfiler_go commit 19aa66aed9f704dc98680d2573ff7b13c81c0ca2-dirty

diff -r 5aba765e27b4 -r 49ae9762eb96 clusterProfiler_go.R
--- a/clusterProfiler_go.R	Mon Mar 19 14:01:29 2018 -0400
+++ b/clusterProfiler_go.R	Thu Jun 21 12:25:38 2018 -0400
@@ -1,7 +1,9 @@
 require("clusterProfiler", quietly = TRUE)
+require("DO.db", quietly = TRUE)
 require("org.Hs.eg.db", quietly = TRUE)
 require("ggplot2", quietly = TRUE)
 
+
 args <- commandArgs(trailingOnly = TRUE)
 
 input1 = args[1]
@@ -9,7 +11,7 @@
 output2 = args[3]
 
 gene <- read.table(input1)
-ego <- enrichGO(gene          = c(gene$V2),
+ego <- enrichGO(gene          = c(gene$V1),
                 keyType = "ENTREZID",
                 OrgDb         = org.Hs.eg.db,
                 ont           = "BP",
diff -r 5aba765e27b4 -r 49ae9762eb96 clusterProfiler_go.xml
--- a/clusterProfiler_go.xml	Mon Mar 19 14:01:29 2018 -0400
+++ b/clusterProfiler_go.xml	Thu Jun 21 12:25:38 2018 -0400
@@ -4,7 +4,8 @@
         <requirement type="package" version="3.6.0">bioconductor-clusterprofiler</requirement>
         <requirement type="package">r-ggplot2</requirement>
         <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
-    </requirements>
+        <requirement type="package" version="2.9">bioconductor-do.db</requirement>
+       </requirements>
     <command detect_errors="exit_code"><![CDATA[
         Rscript  ${__tool_directory__}/clusterProfiler_go.R "$input1" "$output1" "$output2"
     ]]></command>
@@ -28,4 +29,4 @@
     <citations>
         <citation type="doi">10.1089/omi.2011.0118</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>