Mercurial > repos > kpbioteam > clusterprofiler_go
comparison clusterProfiler_go.R @ 7:e63c8d858a65 draft default tip
planemo upload for repository https://github.com/kpbioteam/clusterProfiler_go commit 19aa66aed9f704dc98680d2573ff7b13c81c0ca2-dirty
| author | kpbioteam |
|---|---|
| date | Mon, 16 Jul 2018 06:20:31 -0400 |
| parents | 6d08a0432d3f |
| children |
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| 6:6d08a0432d3f | 7:e63c8d858a65 |
|---|---|
| 10 output1 = args[2] | 10 output1 = args[2] |
| 11 output2 = args[3] | 11 output2 = args[3] |
| 12 | 12 |
| 13 gene <- read.table(input1) | 13 gene <- read.table(input1) |
| 14 ego <- enrichGO(gene = c(gene$V1), | 14 ego <- enrichGO(gene = c(gene$V1), |
| 15 keyType = "SYMBOL", | 15 keyType = "ENTREZID", |
| 16 OrgDb = org.Hs.eg.db, | 16 OrgDb = org.Hs.eg.db, |
| 17 ont = "BP", | 17 ont = "BP", |
| 18 pAdjustMethod = "BH", | 18 pAdjustMethod = "BH", |
| 19 pvalueCutoff = 0.01, | 19 pvalueCutoff = 0.01, |
| 20 qvalueCutoff = 0.05, | 20 qvalueCutoff = 0.05, |