Mercurial > repos > kpbioteam > clusterprofiler_go
comparison clusterProfiler_go.xml @ 0:5aba765e27b4 draft
planemo upload for repository https://github.com/kpbioteam/clusterProfiler_go commit 19aa66aed9f704dc98680d2573ff7b13c81c0ca2
author | kpbioteam |
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date | Mon, 19 Mar 2018 14:01:29 -0400 |
parents | |
children | 49ae9762eb96 |
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-1:000000000000 | 0:5aba765e27b4 |
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1 <tool id="clusterProfiler_go" name="clusterProfiler_go" version="0.1.0"> | |
2 <description>run GO Analysis</description> | |
3 <requirements> | |
4 <requirement type="package" version="3.6.0">bioconductor-clusterprofiler</requirement> | |
5 <requirement type="package">r-ggplot2</requirement> | |
6 <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement> | |
7 </requirements> | |
8 <command detect_errors="exit_code"><![CDATA[ | |
9 Rscript ${__tool_directory__}/clusterProfiler_go.R "$input1" "$output1" "$output2" | |
10 ]]></command> | |
11 <inputs> | |
12 <param type="data" name="input1" format="txt" /> | |
13 </inputs> | |
14 <outputs> | |
15 <data name="output1" format="txt" /> | |
16 <data name="output2" format="pdf" /> | |
17 </outputs> | |
18 <tests> | |
19 <test> | |
20 <param name="input1" value="genedf.txt"/> | |
21 <output name="output1" file="ego.txt"/> | |
22 <output name="output2" file="ego.pdf"/> | |
23 </test> | |
24 </tests> | |
25 <help><![CDATA[ | |
26 This tool provide GO Enrichment Analysis of a gene set. Given a set of genes, this will return the enrichment GO categories after FDR control. | |
27 ]]></help> | |
28 <citations> | |
29 <citation type="doi">10.1089/omi.2011.0118</citation> | |
30 </citations> | |
31 </tool> |