Mercurial > repos > kpbioteam > clusterprofiler_bitr

comparison clusterProfiler_bitr.R @ 1:90120121398f draft default tip

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planemo upload for repository https://github.com/kpbioteam/clusterProfiler_bitr commit 470dccce41afc79ef1cc7a6722b50d0c258e0f4f-dirty
author kpbioteam
date Mon, 16 Jul 2018 06:25:51 -0400
parents e7a71e686f53
children
comparison
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0:e7a71e686f53 1:90120121398f
9 output = args[4] 9 output = args[4]
10 10
11 gene <- c(read.table(input1)) 11 gene <- c(read.table(input1))
12 gene.df = bitr(gene$V1, fromType=input2, toType=input3, OrgDb="org.Hs.eg.db") 12 gene.df = bitr(gene$V1, fromType=input2, toType=input3, OrgDb="org.Hs.eg.db")
13 13
14 write.table(gene.df,file = output,row.names = FALSE) 14 write.table(gene.df, file= output, quote = FALSE,col.names = FALSE, row.names = FALSE, sep = "\t")