comparison chipeakanno_annopeaks.xml @ 2:ad60ed89de63 draft

planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit 5b7c2e824bb5cc85bf8711eca1cc94c68998ebb2-dirty

1:a90b6d85463c

            <param name="input4" value="5000"/>
            <output name="output1" file="annoTab.txt"/>
        </test>
    </tests>
    <help><![CDATA[
This tool annotate peaks from GRSet class.
bindingType
Specifying the criteria to associate peaks with annotation. Here is how to use it together with the parameter bindingRegion
To obtain peaks within 5kb upstream and up to 3kb downstream of TSS within the gene body, set bindingType = "startSite" and bindingRegion = c(-5000, 3000)
To obtain peaks up to 5kb upstream within the gene body and 3kb downstream of gene/Exon End, set bindingType = "endSite" and bindingRegion = c(-5000, 3000)
To obtain peaks from 5kb upstream to 3kb downstream of genes/Exons , set bindingType = "fullRange" and bindingRegion = c(-5000, 3000)

2:ad60ed89de63

            <param name="input4" value="5000"/>
            <output name="output1" file="annoTab.txt"/>
        </test>
    </tests>
    <help><![CDATA[
This tool annotate peaks from bed file.
bindingType
Specifying the criteria to associate peaks with annotation. Here is how to use it together with the parameter bindingRegion
To obtain peaks within 5kb upstream and up to 3kb downstream of TSS within the gene body, set bindingType = "startSite" and bindingRegion = c(-5000, 3000)
To obtain peaks up to 5kb upstream within the gene body and 3kb downstream of gene/Exon End, set bindingType = "endSite" and bindingRegion = c(-5000, 3000)
To obtain peaks from 5kb upstream to 3kb downstream of genes/Exons , set bindingType = "fullRange" and bindingRegion = c(-5000, 3000)