comparison chipeakanno_annopeaks.xml @ 9:8d05c398fecd draft

planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit 5ee10ba73cd634a41b84f059f02edeaa04f69b8d-dirty

8:0473a72c943c

                        <option value="fullRange">fullRange</option>
                        <option value="nearestBiDirectionalPromoters">nearestBiDirectionalPromoters</option>
                    </param>
          <param name="input3" type="text" value="-5000" label="bindingRegionStart" help="e.g. to obtain peaks within 5kb upstream and up to 3kb downstream of TSS within the gene body, set bindingType = startSite and bindingRegion = c(-5000, 3000)"/>
            <param name="input4" type="text" value="3000" label="bindingRegionEnd" help="e.g. to obtain peaks with nearest bi-directional promoters within 5kb upstream and 3kb downstream of TSS, set bindingType = nearestBiDirectionalPromoters and bindingRegion = c(-5000, 3000)"/>
    </inputs>
    <outputs>
        <data name="output1" format="txt" />
    </outputs>
    <tests>

9:8d05c398fecd

                        <option value="fullRange">fullRange</option>
                        <option value="nearestBiDirectionalPromoters">nearestBiDirectionalPromoters</option>
                    </param>
          <param name="input3" type="text" value="-5000" label="bindingRegionStart" help="e.g. to obtain peaks within 5kb upstream and up to 3kb downstream of TSS within the gene body, set bindingType = startSite and bindingRegion = c(-5000, 3000)"/>
            <param name="input4" type="text" value="3000" label="bindingRegionEnd" help="e.g. to obtain peaks with nearest bi-directional promoters within 5kb upstream and 3kb downstream of TSS, set bindingType = nearestBiDirectionalPromoters and bindingRegion = c(-5000, 3000)"/>

<param name="input5" type="text" value="1" label="Additional Column of Score" help="Position of Additional Column of the Score" />
    </inputs>
    <outputs>
        <data name="output1" format="txt" />
    </outputs>
    <tests>