Mercurial > repos > kpbioteam > chipeakanno_annopeaks
comparison chipeakanno_annopeaks.xml @ 5:76b9c7ea15d5 draft
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit 5ee10ba73cd634a41b84f059f02edeaa04f69b8d
| author | kpbioteam |
|---|---|
| date | Tue, 19 Jun 2018 10:15:42 -0400 |
| parents | ad60ed89de63 |
| children | ed66a80e81e8 |
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| 4:b5bc7e70b949 | 5:76b9c7ea15d5 |
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| 7 </requirements> | 7 </requirements> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 Rscript ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$output1" | 9 Rscript ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$output1" |
| 10 ]]></command> | 10 ]]></command> |
| 11 <inputs> | 11 <inputs> |
| 12 <param type="data" name="input1" format="bed"/> | 12 <param type="data" name="input1" format="bedgraph"/> |
| 13 <param name="input2" type="select" label="bindingType" help="Specifying the criteria to associate peaks with annotation e.g. startSite start position of the feature strand"> | 13 <param name="input2" type="select" label="bindingType" help="Specifying the criteria to associate peaks with annotation e.g. startSite start position of the feature strand"> |
| 14 <option value="startSite">startSite</option> | 14 <option value="startSite">startSite</option> |
| 15 <option value="endSite">endSite</option> | 15 <option value="endSite">endSite</option> |
| 16 <option value="fullRange">fullRange</option> | 16 <option value="fullRange">fullRange</option> |
| 17 <option value="nearestBiDirectionalPromoters">nearestBiDirectionalPromoters</option> | 17 <option value="nearestBiDirectionalPromoters">nearestBiDirectionalPromoters</option> |