Mercurial > repos > kltm > obotools_02

annotate fetch_ontology.xml @ 0:028babd7a6c5 draft default tip

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author kltm
date Fri, 29 Mar 2013 17:30:07 -0400
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0
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1 <tool id="fetch-remote-ontology" name="fetch remote ontology" version="0.0.14">
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2 <description>from OBO repository</description>
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3 <requirements>
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4 <requirement type="package" version="1.0.12">obo-scripts</requirement>
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5 </requirements>
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6 <command>obo-fetch-remote-ontology.pl $ont > $output</command>
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7 <inputs>
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8 <param name="ont" type="text" size="50" value="" label="Ontology ID Space" />
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9 </inputs>
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10 <outputs>
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11 <data format="obo" name="output" />
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12 </outputs>
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13 <tests>
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14 <test>
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15 <param name="ont" value="ECO" />
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16 <output name="output" file="output.eco.obo.contains"/>
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17 </test>
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18 </tests>
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19
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20
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21 <help>
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22 .. class:: infomark
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23
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24 Fetch entire ontology in OBO format
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25
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26 **Example**
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27
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28 Here are some common ID spaces::
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29
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30 GO gene ontology
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31 CL cell ontology
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32
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33 **More information**
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34
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35 http://github.com/cmungall/obo-scripts
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36
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37 </help>
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38
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39 </tool>
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40
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