# HG changeset patch
# User kevyin
# Date 1352271488 18000
# Node ID 688316a1e44da747fe4774a9e9c6a695b05da178
# Parent a42cf3acf7782c9996dc74271ccd8cf0b22669b2
Uploaded
diff -r a42cf3acf778 -r 688316a1e44d annotatePeaks.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/annotatePeaks.xml Wed Nov 07 01:58:08 2012 -0500
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+ homer
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+ annotatePeaks.pl $input_bed $genome_selector 1> $out_annotated
+ 2> $out_log || echo "Error running annotatePeaks." >&2
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+ .. class:: infomark
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+ **Homer annoatePeaks**
+ More information on accepted formats
+ http://biowhat.ucsd.edu/homer/ngs/annotation.html
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diff -r a42cf3acf778 -r 688316a1e44d bed2pos.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bed2pos.xml Wed Nov 07 01:58:08 2012 -0500
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+ homer
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+ bed2pos.pl $input_bed 1> $out_pos
+ 2> $out_log || echo "Error running bed2pos." >&2
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+ .. class:: infomark
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+ **Homer bed2pos.pl**
+ http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html
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diff -r a42cf3acf778 -r 688316a1e44d pos2bed.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/pos2bed.xml Wed Nov 07 01:58:08 2012 -0500
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+ homer
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+ pos2bed.pl $input_peak 1> $out_bed
+ 2> $out_log || echo "Error running pos2bed." >&2
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+ .. class:: infomark
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+ **Homer pos2bed.pl**
+ http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html
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