# HG changeset patch # User kevyin # Date 1352271488 18000 # Node ID 688316a1e44da747fe4774a9e9c6a695b05da178 # Parent a42cf3acf7782c9996dc74271ccd8cf0b22669b2 Uploaded diff -r a42cf3acf778 -r 688316a1e44d annotatePeaks.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/annotatePeaks.xml Wed Nov 07 01:58:08 2012 -0500 @@ -0,0 +1,41 @@ + + + homer + + + + + annotatePeaks.pl $input_bed $genome_selector 1> $out_annotated + 2> $out_log || echo "Error running annotatePeaks." >&2 + + + + + + + + + + + + + + + + + + + + + + + .. class:: infomark + + **Homer annoatePeaks** + More information on accepted formats + http://biowhat.ucsd.edu/homer/ngs/annotation.html + + + + + diff -r a42cf3acf778 -r 688316a1e44d bed2pos.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bed2pos.xml Wed Nov 07 01:58:08 2012 -0500 @@ -0,0 +1,34 @@ + + + homer + + + + + bed2pos.pl $input_bed 1> $out_pos + 2> $out_log || echo "Error running bed2pos." >&2 + + + + + + + + + + + + + + + + + + + .. class:: infomark + + **Homer bed2pos.pl** + http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html + + + diff -r a42cf3acf778 -r 688316a1e44d pos2bed.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pos2bed.xml Wed Nov 07 01:58:08 2012 -0500 @@ -0,0 +1,34 @@ + + + homer + + + + + pos2bed.pl $input_peak 1> $out_bed + 2> $out_log || echo "Error running pos2bed." >&2 + + + + + + + + + + + + + + + + + + + .. class:: infomark + + **Homer pos2bed.pl** + http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html + + +