# HG changeset patch
# User Kevin Ying <k.ying@garvan.org.au>
# Date 1347607172 -36000
# Node ID 42f66e55b26bfca966418236ec983c8c831d16e5
# Parent  a97405a7bed3003adc8f9567be7dd63563b39544
slight change to readme

diff -r a97405a7bed3 -r 42f66e55b26b README
--- a/README	Fri Sep 14 12:00:23 2012 +1000
+++ b/README	Fri Sep 14 17:19:32 2012 +1000
@@ -1,30 +1,33 @@
 Copyright (c) 2012, Kenneth Sabir
 All rights reserved.
 
-Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+Redistribution and use in source and binary forms, with or without modification, are permitted provided 
+that the following conditions are met:
 
-        Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
-        Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the 
-            documentation and/or other materials provided with the distribution.
-        Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse or promote products derived from this 
-            software without specific prior written permission.
+    - Redistributions of source code must retain the above copyright notice, this list of conditions and 
+        the following disclaimer.
+    - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and 
+        the following disclaimer in the documentation and/or other materials provided with the distribution.
+    - Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse 
+        or promote products derived from this software without specific prior written permission.
 
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, 
-THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS 
-BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 
-GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 
-LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF 
-SUCH DAMAGE.
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, 
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, 
+INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY 
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING 
+IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 ##################################################
-Installation:
+INSTALLATION:
 #================================================#
 
-Set the number of threads to use edit fastq_groomer_parallel.xml:
-Modify the last argument in the <command> tag, Default is 2
+Set the number of threads to use by editing: 
+fastq_groomer_parallel.xml:
+Modify the last argument in the <command> tag, Default is 8
 
-
-Tested on -r e6444e7a1685
+Tested on galaxy-dist -r e6444e7a1685
 This currently depends on the following galaxy_utils python library which should come with the default galaxy install
 
 More info:
diff -r a97405a7bed3 -r 42f66e55b26b fastq_groomer_parallel.xml
--- a/fastq_groomer_parallel.xml	Fri Sep 14 12:00:23 2012 +1000
+++ b/fastq_groomer_parallel.xml	Fri Sep 14 17:19:32 2012 +1000
@@ -1,4 +1,4 @@
-<tool id="fastq_groomer_parallel" name="FASTQ Parallel Groomer" version="0.3.0">
+<tool id="fastq_groomer_parallel" name="FASTQ Parallel Groomer" version="0.3.1">
   <description>Parallel Implementation of FASTQ Groomer</description>
   <command interpreter="python">fastq_groomer_parallel.py '$input_file' '$input_type' '$output_file'
 #if str( $options_type['options_type_selector'] ) == 'basic':
@@ -11,7 +11,7 @@
 #else:
 '${options_type.output_type}' '${options_type.force_quality_encoding}' '${options_type.summarize_input}'
 #end if
-'2'
+'8'
 </command>
   <inputs>
     <param name="input_file" type="data" format="fastq" label="File to groom" />