# HG changeset patch # User kellrott # Date 1385165425 18000 # Node ID 3dcbc98040a1e8c52dcd4c8dbd188fef6bc9b4da # Parent 17b841e1f52fa9e1c3ca4e8b6c11afe9444b6107 Uploaded diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/._synapse_create.xml Binary file synapse_interface/._synapse_create.xml has changed diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/._synapse_download.xml Binary file synapse_interface/._synapse_download.xml has changed diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/._synapse_query.xml Binary file synapse_interface/._synapse_query.xml has changed diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/synapse_create.xml --- a/synapse_interface/synapse_create.xml Wed Jun 12 14:13:22 2013 -0400 +++ b/synapse_interface/synapse_create.xml Fri Nov 22 19:10:25 2013 -0500 @@ -1,7 +1,7 @@ - + Create Synapse - synapseclient + synapseclient synapse_galaxy_client.py upload $script_file $etype @@ -120,7 +120,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_upload&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_upload&" target="_blank">at Synapse</a> diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/synapse_download.xml --- a/synapse_interface/synapse_download.xml Wed Jun 12 14:13:22 2013 -0400 +++ b/synapse_interface/synapse_download.xml Fri Nov 22 19:10:25 2013 -0500 @@ -1,7 +1,7 @@ - + Download Synapse Entity - synapseclient + synapseclient synapse_galaxy_client.py get $script_file $synid $outfile @@ -42,7 +42,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_download&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_download&" target="_blank">at Synapse</a> diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/synapse_query.xml --- a/synapse_interface/synapse_query.xml Wed Jun 12 14:13:22 2013 -0400 +++ b/synapse_interface/synapse_query.xml Fri Nov 22 19:10:25 2013 -0500 @@ -1,7 +1,7 @@ - + Query Synapse - synapseclient + synapseclient synapse_galaxy_client.py query $script_file $query_file $outfile @@ -48,7 +48,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_query&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_query&" target="_blank">at Synapse</a> Example Query: diff -r 17b841e1f52f -r 3dcbc98040a1 synapse_interface/tool_dependencies.xml --- a/synapse_interface/tool_dependencies.xml Wed Jun 12 14:13:22 2013 -0400 +++ b/synapse_interface/tool_dependencies.xml Fri Nov 22 19:10:25 2013 -0500 @@ -1,13 +1,13 @@ - + - synapseclient == 0.3.0 + synapseclient == 0.5.1 A client for Synapse, a collaborative compute space that allows scientists to share and analyze data together. Synapse brings together scientific data, tools, and disease models into a commons that enables true collaborative research. The platform consists of a web portal, web services, and integration with data analysis tools such as R, python, Galaxy and Java. - \ No newline at end of file +