diff matrix_manipulate/matrix_rank_normalize.xml @ 0:eeaa112c9ee0 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/matrix_manipulate/matrix_rank_normalize.xml	Fri Dec 21 16:43:16 2012 -0500
@@ -0,0 +1,24 @@
+<tool id="rank_normalize" name="Rank Normalize" version="1.0.0">
+  <description>Perform a rank normalized transform to a number matrix</description>
+  <command interpreter="python">rank_normalize.py 
+#if $dropZeros:
+-z
+#end if  
+#if $na2zero:
+-n
+#end if
+$inMatrix -o $outMatrix
+  </command>
+  <inputs>
+	    <param name="inMatrix" type="data" format="tabular" label="Input Matrix"/>
+      <param name="dropZeros" type="boolean" label="Drop Input Zeros" checked="True"/>
+      <param name="na2zero" type="boolean" label="Set Output NAs to Zero" checked="False"/>
+  </inputs>
+  <outputs>
+      <data name="outMatrix" format="tabular"/>
+  </outputs>
+  <help>
+Determines the ranking of every number in a matrix and then normalizes them into a 
+distribution between 0 and 1.
+  </help>
+</tool>