diff fetch_ontology.xml @ 0:4f8ea94020b1

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fetch_ontology.xml	Fri Feb 08 20:12:14 2013 -0500
@@ -0,0 +1,41 @@
+<tool id="fetch-remote-ontology" name="fetch remote ontology" version="0.0.13">
+  <description>from OBO repository</description>
+  <requirements>
+    <requirement type="package" version="1.0.11">obo-scripts</requirement>
+  </requirements>
+  <command>obo-fetch-remote-ontology.pl $ont > $output</command>
+  <inputs>
+    <param name="ont" type="text" size="50" value="" label="Ontology ID Space" />
+  </inputs>
+  <outputs>
+    <data format="obo" name="output" />
+  </outputs>
+  <tests>
+    <test>
+     <param name="ont" value="ECO" />
+     <output name="output" file="output.eco.obo.contains" compare="contains"/>
+    </test>
+  </tests>
+
+
+  <help>
+.. class:: infomark
+
+Fetch entire ontology in OBO format
+
+**Example**
+
+Here are some common ID spaces::
+
+  GO    gene ontology
+  CL    cell ontology
+
+**More information**
+
+http://github.com/cmungall/obo-scripts
+
+  </help>
+
+</tool>
+
+