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comparison ontologizer.xml @ 31:06e8a43d7d65

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author jorrit
date Tue, 26 Feb 2013 22:49:33 -0500
parents f48064da7849
children f0048a544d61
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30:f48064da7849 31:06e8a43d7d65
1 <tool id="ontologizer" name="ontologizer" version="0.0.15"> 1 <tool id="ontologizer" name="ontologizer" version="0.0.15">
2 <description>from http://compbio.charite.de/contao/</description> 2 <description>from http://compbio.charite.de/contao/</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.0.2">ontologizer-jar</requirement> 4 <requirement type="package" version="0.0.3">ontologizer-jar</requirement>
5 </requirements> 5 </requirements>
6 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $population --studyset $studyset --dot 0.05 --mtc "$mtc" --calculation "$calc"; mv table-*.txt $tablefile; mv view-*.dot $dotfile</command> 6 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $population --studyset $studyset --dot 0.05 --mtc "$mtc" --calculation "$calc"; mv table-*.txt $tablefile; mv view-*.dot $dotfile</command>
7 <inputs> 7 <inputs>
8 <param name="go" type="data" format="obo" label="Gene Ontology File" /> 8 <param name="go" type="data" format="obo" label="Gene Ontology File" />
9 <param name="gaf" type="data" format="gaf" label="Gene Association File" /> 9 <param name="gaf" type="data" format="gaf" label="Gene Association File" />