annotate nif.xml @ 51:b60e0f0dab74 draft default tip

another try at adding amigo tool
author Seth Carbon <sjcarbon@lbl.gov>
date Fri, 29 Mar 2013 14:17:34 -0700
parents 20ebf0e02a97
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
43
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
1 <?xml version="1.0"?>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
2 <!--
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
6 -->
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
7 <tool name="Neuroscience Information Framework" id="nif" tool_type="data_source" version="0.1">
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
8 <description>NIF (Beta) Data Services</description>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
10 <inputs action="http://beta.neuinfo.org/mynif/" check_values="false" method="get" target="_top">
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
11 <display>Go to the Neuroscience Information Framework at $GALAXY_URL</display>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
13 <param name="tool_id" type="hidden" value="nif" />
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
14 <param name="externalTool" type="hidden" value="Galaxy" />
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
15 </inputs>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
16 <uihints minwidth="800"/>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
17 <outputs>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
18 <data name="output" format="txt" />
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
19 </outputs>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
20 <options sanitize="False" refresh="True"/>
Chris Mungall <cmungall@gmail.com>
parents:
diff changeset
21 </tool>