Mercurial > repos > joe-usc > ceas

changeset 7:527a2d26249f draft default tip

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planemo upload
author joe-usc
date Mon, 21 Nov 2016 00:32:02 -0500
parents e281a5491a1f
children
files ceas.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/ceas.xml	Sun Nov 20 23:33:36 2016 -0500
+++ b/ceas.xml	Mon Nov 21 00:32:02 2016 -0500
@@ -6,7 +6,7 @@
         <exit_code range="1:" />
     </stdio>
     <command><![CDATA[
-        ceas -g $gdb -b $bed > $log_output 2>&1
+        ceas -g $gdb -b $bed --name "temp" > $log_output 2>&1 && mv temp.xls $xls_output && mv temp.R $R_script
     ]]></command>
     <inputs>
         <param type="data" name="gdb"/>
@@ -14,7 +14,7 @@
     </inputs>
     <outputs>
         <data name="log_output" format="txt" label="CEAS on ${on_string} (log output)" />
-        <data name="pdf_report" format="pdf" label="CEAS on ${on_string} (PDF report)" />
+        <data name="R_script" format="txt" label="CEAS on ${on_string} (R script)" />
         <data name="xls_output" format="interval" label="CEAS on ${on_string} (XLS output)"/>
     </outputs>
     <help><![CDATA[