Mercurial > repos > joachim-jacob > blat

diff tool_dependencies.xml @ 0:3cec538aab33 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author joachim-jacob
date Thu, 30 May 2013 07:13:55 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 30 07:13:55 2013 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blat" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
+                <action type="move_file">
+                    <source>blat</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="shell_command">chmod +x $INSTALL_DIR/bin/blat</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+The BLAT binary for linux x86_64 is retrieved from UCSC.
+        </readme>
+    </package>
+</tool_dependency>