annotate README.md @ 5:8ea91dfb4a00 default tip

$version not yet implemented.
author John Chilton <jmchilton@gmail.com>
date Tue, 06 Aug 2013 19:49:40 -0500
parents d2c6b25e1a60
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
1 # Peptide-Spectrum Match Evaluator (psm_eval)
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
2
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
3 This repository contains the psm_eval tool that allows for
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
4 re-evaulation of identified PSM based on multiple, flexiable user
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
5 supplied critiria and produces results that can be used to visualize
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
6 PSMs using ProtVis
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
7 (https://github.com/jmchilton/protvis/tree/lorikeet-reintegration).
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
8
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
9
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
10 # Obtaining Tools
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
11
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
12 Repositories for all Galaxy-P tools can be found at
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
13 https:/bitbucket.org/galaxyp/.
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
14
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
15 # Contact
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
16
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
17 Please send suggestions for improvements and bug reports to
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
18 jmchilton@gmail.com.
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
19
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
20 # License
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
21
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
22 All Galaxy-P tools are licensed under the Apache License Version 2.0
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
23 unless otherwise documented.
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
24
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
25 # Tool Versioning
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
26
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
27 Galaxy-P tools will have versions of the form X.Y.Z. Versions
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
28 differing only after the second decimal should be completely
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
29 compatible with each other. Breaking changes should result in an
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
30 increment of the number before and/or after the first decimal. All
d2c6b25e1a60 Initial commit.
jmchilton
parents:
diff changeset
31 tools of version less than 1.0.0 should be considered beta.