Mercurial > repos > jmchilton > johnstestrepo
diff galaxyp-galaxyp-toolshed-msconvert-9663ae998499/README.md @ 0:942cec8d04c7 draft
Initial commit.
| author | jmchilton |
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| date | Wed, 19 Sep 2012 00:07:16 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxyp-galaxyp-toolshed-msconvert-9663ae998499/README.md Wed Sep 19 00:07:16 2012 -0400 @@ -0,0 +1,42 @@ +Galaxy tool wrappers for msconvert. + +Due to potential difficulties installing ProteoWizard with vendor +library support, tools for interacting with vendor types are seperated +out into their own wrappers. Galaxy is generally deployed under Linux, +but vendor support in ProteoWizard requires .NET 4.0. There are at +least two ways to get this to work: + + * Galaxy jobs may be configured to submit to a Windows host with + ProteoWizard installed using the + LWR. http://wiki.g2.bx.psu.edu/Admin/Config/LWR + + * ProteoWizard can be installed under Wine. Guidance on how to set + this up and package such environments for cloud deployments can be + found here: https://github.com/jmchilton/proteomics-wine-env + +Wrappers for both msconvert version 2 and version 3+ are provided +because version 3+ of msconvert with vendor library support requires +.NET 4.0 and this may difficult or impossible under Wine in Linux with +all but the most recent versions of Wine (1.4+). + + +Repositories for all Galaxy-P tools can be found at +https:/bitbucket.org/galaxyp/. + +Contact: + +Please send suggestions for improvements and bug reports to +jmchilton@gmail.com. + +License: + +All Galaxy-P tools are licensed under the Apache License Version 2.0 +unless otherwise noted. + +Tool Versions: + +Galaxy-P tools will have versions of the form X.Y.Z. Versions +differing only after the second decimal should be completely +compatible with each other. Breaking changes should result in an +increment of the number before and/or after the first decimal. All +tools of version less than 1.0.0 should be considered beta.
