Mercurial > repos > jjohnson > trinityrnaseq

changeset 9:09c1e388c20c default tip

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Change samtools tool_dependency to iuc package_samtools_0_1_19
author Jim Johnson <jj@umn.edu>
date Thu, 06 Feb 2014 10:45:40 -0600
parents 233f2f5169f8
children
files tool_dependencies.xml trinityrnaseq.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Feb 06 09:33:47 2014 -0600
+++ b/tool_dependencies.xml	Thu Feb 06 10:45:40 2014 -0600
@@ -3,8 +3,8 @@
     <package name="trinityrnaseq" version="2013_08_14">
         <repository changeset_revision="df23c0ef83a6" name="package_trinityrnaseq_2013_08_14" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.19">
+        <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bowtie" version="1.0.0">
         <repository changeset_revision="e682af6a72cd" name="package_bowtie_1_0_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
--- a/trinityrnaseq.xml	Thu Feb 06 09:33:47 2014 -0600
+++ b/trinityrnaseq.xml	Thu Feb 06 10:45:40 2014 -0600
@@ -3,7 +3,7 @@
     <description>De novo assembly of RNA-Seq data Using Trinity</description>
     <requirements>
         <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
-        <requirement type="package" version="0.1.18">samtools</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
         <requirement type="package" version="1.0.0">bowtie</requirement>
     </requirements>
     <command>