# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1383948697 21600
# Node ID a9d882069cd406b949f884c50a247f6e04024d56
# Parent  5eb99d21ef0dd6e4de8761a167b5bcd6722102a4
Fix grep for determining successful run.

diff -r 5eb99d21ef0d -r a9d882069cd4 trinityrnaseq.xml
--- a/trinityrnaseq.xml	Thu Sep 05 08:08:21 2013 -0500
+++ b/trinityrnaseq.xml	Fri Nov 08 16:11:37 2013 -0600
@@ -43,7 +43,7 @@
 	
                 
         ## direct to output
-        | tee $trinity_log | grep 'Error'
+        | tee $trinity_log | grep -q 'All commands completed successfully.'
  
     </command>
     <inputs>