Mercurial > repos > jjohnson > trinityrnaseq
comparison trinityrnaseq.xml @ 9:09c1e388c20c default tip
Change samtools tool_dependency to iuc package_samtools_0_1_19
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 06 Feb 2014 10:45:40 -0600 |
| parents | d5580071d910 |
| children |
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| 8:233f2f5169f8 | 9:09c1e388c20c |
|---|---|
| 1 <tool id="trinityrnaseq" name="Trinity" version="0.0.2"> | 1 <tool id="trinityrnaseq" name="Trinity" version="0.0.2"> |
| 2 <!-- Written by Jeremy Goecks, now maintained here by bhaas --> | 2 <!-- Written by Jeremy Goecks, now maintained here by bhaas --> |
| 3 <description>De novo assembly of RNA-Seq data Using Trinity</description> | 3 <description>De novo assembly of RNA-Seq data Using Trinity</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2013_08_14">trinityrnaseq</requirement> | 5 <requirement type="package" version="2013_08_14">trinityrnaseq</requirement> |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | 6 <requirement type="package" version="0.1.19">samtools</requirement> |
| 7 <requirement type="package" version="1.0.0">bowtie</requirement> | 7 <requirement type="package" version="1.0.0">bowtie</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command> | 9 <command> |
| 10 Trinity.pl --JM $JM --CPU $CPU | 10 Trinity.pl --JM $JM --CPU $CPU |
| 11 | 11 |