Mercurial > repos > jjohnson > trinityrnaseq
comparison trinityrnaseq.xml @ 3:a9d882069cd4
Fix grep for determining successful run.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 08 Nov 2013 16:11:37 -0600 |
| parents | 5eb99d21ef0d |
| children | d5580071d910 |
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| 2:5eb99d21ef0d | 3:a9d882069cd4 |
|---|---|
| 41 #end if | 41 #end if |
| 42 #end if | 42 #end if |
| 43 | 43 |
| 44 | 44 |
| 45 ## direct to output | 45 ## direct to output |
| 46 | tee $trinity_log | grep 'Error' | 46 | tee $trinity_log | grep -q 'All commands completed successfully.' |
| 47 | 47 |
| 48 </command> | 48 </command> |
| 49 <inputs> | 49 <inputs> |
| 50 <param name="JM" type="select" label="JM" help="Amount of memory to allocate to Jellyfish for Kmer catalog construction"> | 50 <param name="JM" type="select" label="JM" help="Amount of memory to allocate to Jellyfish for Kmer catalog construction"> |
| 51 <option value="1G">1G</option> | 51 <option value="1G">1G</option> |