Mercurial > repos > jjohnson > translate_bed_sequences

changeset 1:639ee511d552

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Add biopython requirement
author Jim Johnson <jj@umn.edu>
date Thu, 09 Jan 2014 09:47:50 -0600
parents 57e586ee821e
children 359addb9b9d4
files tool_dependencies.xml translate_bed_sequences.xml
diffstat 2 files changed, 10 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jan 09 09:47:50 2014 -0600
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.62">
+        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>
--- a/translate_bed_sequences.xml	Wed Jan 08 18:33:29 2014 -0500
+++ b/translate_bed_sequences.xml	Thu Jan 09 09:47:50 2014 -0600
@@ -1,6 +1,10 @@
 <?xml version="1.0"?>
 <tool id="translate_bed_sequences" name="Translate BED Sequences" version="0.0.1">
   <description>3 frame translation of BED augmented with a sequence column</description>
+  <requirements>
+    <requirement type="package" version="1.62">biopython</requirement>
+    <requirement type="python-module">Bio</requirement>
+  </requirements>
   <command interpreter="python">translate_bed_sequences.py  --input "$input" 
   #if $reference:
    --reference $reference