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view test-data/translated_bed_sequences.fa @ 2:359addb9b9d4

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Do not include the stop codon when filtering
author Jim Johnson <jj@umn.edu>
date Thu, 09 Jan 2014 14:24:41 -0600
parents 57e586ee821e
children aa93f7910259
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>JUNC00019210_2 pep:novel chromosome:GRCh37:15:40902460:40907575:1 depth:1
SYENSEKVRNGRNKKLEDNYCEIT
>JUNC00019210_3 pep:novel chromosome:GRCh37:15:40902461:40907552:1 depth:1
HMKIVRKSEMEGIRN*
>JUNC00000003_1 pep:novel chromosome:GRCh37:9:17406:18053:-1 depth:1
APWTSGPCRYKKYVFLDPLAGAVTKTHVMLGAE
>JUNC00000003_2 pep:novel chromosome:GRCh37:9:17435:18052:-1 depth:1
PPGRAGPAGTRSMSSWTPWLVL*
>JUNC00000003_3 pep:novel chromosome:GRCh37:9:17404:18051:-1 depth:1
PLDERALQVQEVCLPGPPGWCCNKDPCDAGGRD
>JUNC00000874_2 pep:novel chromosome:GRCh37:8:27369376:27370079:1 depth:1
PTSCNPSDMSHGYVTVKGYHKAKATHRGPWLVA
>JUNC00001897_1 pep:novel chromosome:GRCh37:7:99077597:99079392:1 depth:1
HLLSLFFQLGVHICIPNFRNNSVSHCTQLRVLL
>JUNC00001897_2 pep:novel chromosome:GRCh37:7:99077598:99079363:1 depth:1
IYCLYFSNLVCISVYPTSEITV*
>JUNC00002152_1 pep:novel chromosome:GRCh37:7:148909514:148910831:1 depth:1
DQQDLADRDIPTDPNSGENKSLSSQHMTFCHGS
>JUNC00002152_2 pep:novel chromosome:GRCh37:7:148909515:148910814:1 depth:1
ISRIWQTEIFPRIPIQVRTRVSHLST*
>JUNC00002625_1 pep:novel chromosome:GRCh37:6:41766614:41767580:-1 depth:1
LKDSGGLAVIIERRLGSMSSLT
>JUNC00002625_3 pep:novel chromosome:GRCh37:6:41766612:41767578:-1 depth:1
KRFRWSGRNHREKIGVHVVFDQ
>JUNC00002772_1 pep:novel chromosome:GRCh37:6:84856494:84862316:-1 depth:1
LKMKSEAVMNQFENSMRRYL*