# HG changeset patch
# User jjohnson
# Date 1526323722 14400
# Node ID 4e23dcad9087a001d75ba773a16334ee4910fd1a
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit d390af4450c890f34bfb02a5c1feaaa10b015411-dirty
diff -r 000000000000 -r 4e23dcad9087 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Mon May 14 14:48:42 2018 -0400
@@ -0,0 +1,15 @@
+
+ 5.0.0
+
+
+ tpp
+
+
+
+
+
+ 10.1002/pmic.200600625
+
+
+
+
diff -r 000000000000 -r 4e23dcad9087 spectrast_import.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/spectrast_import.xml Mon May 14 14:48:42 2018 -0400
@@ -0,0 +1,44 @@
+
+ Spectral Library
+
+ macros.xml
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff -r 000000000000 -r 4e23dcad9087 test-data/test.ms2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.ms2 Mon May 14 14:48:42 2018 -0400
@@ -0,0 +1,662 @@
+H CreationDate Mon May 7 19:27:23 2018
+H Extractor BlibToMs2
+H Comment Library /panfs/roc/groups/7/galaxy/galaxy/tmp/bibliospec/msgf.blib
+S 1 1 784.865
+Z 2 1550.64
+D seq FKWNGTDTNSAAEK
+D modified seq FKWNGTDTNSAAEK
+222.15 215.1
+226.12 430.3
+231.15 2031.2
+232.24 955.1
+241.22 230.4
+242.50 344.8
+243.29 93.3
+244.33 770.5
+245.10 291.0
+251.73 315.3
+253.21 348.0
+257.19 370.3
+258.25 1122.5
+259.30 683.3
+261.30 602.0
+262.20 234.3
+266.27 451.5
+267.18 294.7
+269.20 232.8
+270.16 212.1
+271.24 124.4
+272.11 215.8
+275.34 328.5
+276.20 7651.9
+277.25 861.3
+277.93 72.0
+284.14 644.3
+285.15 262.7
+286.39 243.0
+291.42 459.6
+294.19 207.4
+295.43 455.0
+296.25 276.5
+297.18 396.1
+303.36 614.7
+305.27 216.3
+308.28 454.7
+310.35 793.8
+311.28 1132.6
+313.27 324.8
+314.28 148.8
+315.28 707.1
+324.29 862.0
+325.25 264.7
+326.56 311.0
+327.32 272.3
+328.29 148.9
+330.23 162.9
+331.36 155.8
+333.12 323.8
+334.09 178.8
+336.20 547.7
+339.28 419.3
+340.80 530.3
+342.43 389.1
+343.33 858.5
+344.23 641.2
+347.28 1662.9
+348.50 338.7
+349.50 504.0
+350.34 137.8
+352.23 174.6
+354.65 561.3
+355.46 328.7
+357.48 241.0
+359.15 169.6
+361.22 88.9
+363.25 208.1
+365.00 1175.1
+367.46 251.3
+368.27 126.7
+369.16 321.0
+371.18 1050.7
+372.21 291.4
+373.30 976.8
+375.25 480.5
+378.77 287.8
+381.28 989.9
+382.09 222.1
+383.31 721.1
+384.43 245.6
+385.34 307.9
+392.29 129.6
+395.04 1013.0
+397.28 657.8
+398.35 412.4
+399.07 211.3
+401.38 761.4
+403.17 392.7
+404.45 382.6
+406.07 529.0
+409.30 941.1
+410.45 401.6
+412.32 1822.4
+413.45 196.0
+415.37 886.4
+417.45 556.4
+418.43 1548.0
+419.31 909.6
+420.27 1269.1
+421.35 100.5
+422.27 1072.7
+423.21 733.0
+424.26 1664.9
+425.52 643.1
+427.33 1110.1
+428.25 813.2
+429.21 968.2
+430.18 209.9
+431.36 980.7
+433.36 265.0
+434.32 230.9
+437.21 165.4
+440.34 3389.4
+441.23 1414.0
+442.38 767.9
+444.27 961.5
+445.50 639.4
+450.58 210.0
+452.31 453.2
+453.58 506.0
+455.46 820.0
+457.42 328.8
+458.35 1172.6
+459.84 792.2
+461.34 558.4
+462.34 6647.8
+463.49 2858.2
+464.38 507.9
+466.55 218.5
+467.39 393.0
+468.51 816.1
+470.25 367.3
+471.43 1705.3
+472.19 819.5
+473.45 849.2
+474.80 1453.2
+477.43 287.4
+478.45 331.7
+479.32 704.1
+480.42 1086.9
+481.40 552.8
+484.42 248.4
+485.43 927.4
+486.38 960.0
+487.12 1621.6
+488.43 291.9
+489.32 388.4
+491.26 484.4
+492.43 922.4
+494.34 1188.2
+495.43 1722.2
+497.45 435.9
+498.20 270.1
+499.33 553.4
+500.42 208.2
+501.42 654.3
+502.35 191.0
+504.47 395.3
+505.32 2859.5
+506.07 1331.3
+507.34 813.6
+508.50 269.9
+510.34 143.7
+511.47 848.2
+512.44 349.8
+513.33 183.0
+514.37 1457.9
+515.39 1279.6
+516.75 138.7
+519.84 385.6
+521.34 707.9
+522.48 831.6
+523.45 420.6
+524.68 332.5
+525.38 138.3
+526.30 917.4
+527.50 218.1
+528.36 492.2
+531.44 721.0
+535.55 141.4
+537.52 1206.4
+538.36 175.6
+539.36 1106.1
+540.21 361.0
+541.38 600.1
+542.39 2197.9
+543.27 1295.5
+544.18 263.3
+545.49 111.9
+548.34 523.6
+549.41 514.1
+550.44 284.6
+552.33 137.1
+553.37 903.2
+554.46 1225.1
+555.52 2405.3
+556.65 1106.9
+557.49 786.3
+558.86 1888.8
+559.50 1591.0
+560.46 332.5
+561.38 878.1
+564.40 680.8
+566.47 491.2
+567.50 1182.7
+568.47 250.0
+572.36 778.2
+573.35 175.1
+574.83 201.4
+575.88 1850.8
+576.52 4304.3
+577.58 7036.5
+578.41 3519.4
+579.43 790.3
+580.48 239.0
+581.39 178.3
+582.35 276.8
+583.32 706.7
+584.44 862.5
+585.39 820.8
+587.65 1797.1
+588.39 681.8
+589.43 1309.3
+590.44 107.5
+591.82 1806.1
+592.72 128.8
+593.55 678.9
+594.29 966.4
+595.55 332.7
+596.22 529.0
+597.26 791.3
+598.07 885.6
+599.01 1687.5
+600.07 1972.0
+602.62 969.3
+603.78 1327.5
+604.52 727.6
+606.53 707.3
+609.60 377.1
+610.49 1431.3
+611.49 613.4
+612.62 707.5
+613.29 946.6
+614.39 936.4
+615.38 1696.7
+616.58 1958.4
+617.30 51.2
+619.43 4515.9
+620.42 3058.7
+621.56 2387.4
+622.59 1527.2
+623.59 1839.5
+624.41 2587.4
+625.41 1202.7
+626.57 674.2
+627.42 424.7
+628.42 922.2
+629.36 321.4
+630.28 2294.3
+631.26 573.6
+633.46 4293.5
+634.38 994.8
+635.50 1300.6
+637.28 1310.6
+639.15 6815.4
+640.44 4771.1
+641.43 2247.8
+642.26 990.3
+643.43 992.9
+644.46 1600.0
+645.38 165.6
+647.32 5624.7
+647.92 1085.2
+648.54 1520.0
+650.77 1051.1
+651.51 980.8
+653.27 386.0
+654.45 1395.7
+656.64 2493.4
+657.37 190.7
+658.37 380.0
+660.38 723.7
+661.81 2816.5
+662.47 855.0
+665.74 1114.5
+667.70 648.6
+668.70 611.5
+670.59 528.2
+671.70 3173.5
+672.61 858.7
+673.37 518.1
+675.28 202.1
+676.46 784.4
+677.32 891.8
+679.30 559.8
+680.74 727.5
+682.52 410.6
+683.41 57.8
+684.24 1861.7
+685.35 608.0
+686.55 413.3
+687.44 373.9
+688.76 1118.9
+689.48 446.2
+690.44 1531.4
+691.80 3243.5
+692.43 793.5
+693.74 2091.2
+694.54 3539.1
+695.74 605.4
+696.47 80.6
+698.75 1746.8
+699.71 902.8
+700.37 442.0
+702.68 6153.2
+703.57 5776.3
+704.43 1245.5
+705.70 576.8
+707.78 1771.0
+708.65 1508.2
+709.56 1246.1
+711.55 8745.4
+712.43 4402.2
+713.14 142.6
+715.01 645.3
+716.60 3977.7
+717.65 4870.4
+720.45 26895.8
+721.41 7756.3
+722.17 2128.9
+723.32 989.7
+724.34 698.3
+725.67 245.8
+726.44 154.5
+727.49 612.8
+730.35 343.5
+731.52 709.9
+732.92 2950.4
+733.66 3000.5
+734.52 1696.0
+735.62 3270.2
+737.40 1717.4
+738.44 243.2
+739.28 2173.8
+740.63 184.0
+741.47 2744.6
+742.08 388.6
+742.70 917.1
+743.82 443.1
+744.63 959.5
+745.67 4948.2
+746.40 2072.6
+747.02 264.7
+747.99 481.7
+749.39 2365.3
+750.34 1523.3
+751.38 2000.3
+752.65 18627.3
+753.62 4943.6
+754.50 3111.5
+755.78 1725.1
+756.71 1234.9
+757.54 2362.6
+758.58 3455.5
+759.51 320.3
+760.76 1380.4
+762.27 2400.5
+763.03 3926.8
+763.94 1856.3
+764.79 290.4
+766.67 15190.9
+767.66 31097.7
+768.54 9313.9
+769.28 1613.3
+770.30 2269.9
+771.80 708.7
+772.56 224.6
+773.53 234.5
+775.82 28382.5
+776.65 62637.0
+777.59 7367.0
+778.21 352.0
+782.47 191.0
+788.52 273.4
+789.53 162.0
+792.77 638.0
+794.45 745.0
+797.45 364.6
+798.56 185.9
+799.53 330.3
+801.72 1330.7
+811.54 1388.5
+813.51 158.0
+814.46 1694.3
+815.51 1337.6
+816.54 234.0
+817.58 665.7
+818.49 981.8
+819.61 658.6
+822.54 173.9
+827.89 334.6
+830.11 605.3
+831.62 2185.3
+832.58 3591.4
+833.42 524.8
+834.45 338.2
+835.44 8816.1
+836.62 3783.7
+838.67 1190.7
+840.55 563.5
+842.70 239.9
+844.63 779.8
+846.60 512.1
+849.57 12136.6
+850.57 3998.9
+851.74 1094.7
+853.63 393.6
+854.81 81.2
+859.36 182.1
+867.46 317.4
+869.66 236.6
+875.39 280.1
+879.00 135.1
+880.48 612.9
+884.21 1250.3
+887.63 117.1
+888.60 111.9
+890.35 360.1
+895.45 274.2
+898.69 386.7
+899.55 416.4
+901.69 567.5
+903.43 216.5
+907.48 213.3
+908.44 397.7
+909.45 3061.4
+910.81 1370.6
+912.39 1802.8
+913.57 889.8
+915.51 563.1
+916.54 576.0
+917.39 381.5
+918.84 307.3
+919.62 311.9
+921.06 1028.8
+923.48 924.8
+925.45 277.1
+926.88 419.2
+927.70 140.3
+928.57 759.5
+929.63 851.4
+930.61 552.8
+931.69 140.1
+932.62 377.2
+933.40 110.2
+934.62 256.7
+935.82 808.4
+936.63 5353.9
+937.45 3296.2
+938.06 906.5
+938.69 157.0
+939.90 1255.5
+941.93 107.9
+942.71 595.3
+944.64 312.5
+947.40 242.7
+948.83 512.1
+949.84 1085.6
+950.72 585.3
+951.86 1329.1
+952.64 851.4
+953.58 903.8
+954.49 400.4
+955.81 271.0
+958.80 89.0
+959.52 499.1
+962.35 757.9
+964.63 88.6
+965.68 1260.4
+967.02 1344.8
+968.50 1087.0
+969.38 1273.9
+970.45 1521.2
+971.97 486.2
+973.02 1172.7
+975.37 3043.5
+976.62 2757.3
+978.55 621.7
+980.42 346.6
+983.30 475.5
+984.69 249.8
+985.63 196.3
+988.78 163.5
+992.48 3458.0
+993.56 18198.6
+994.68 8532.4
+995.60 3634.7
+996.86 113.0
+997.91 264.2
+998.71 433.2
+1002.52 513.4
+1003.45 192.6
+1004.53 227.9
+1007.65 595.9
+1008.67 577.4
+1010.75 410.0
+1011.61 1210.1
+1012.67 717.9
+1014.64 519.0
+1020.41 1351.2
+1021.02 1176.7
+1022.99 220.4
+1023.66 823.9
+1024.87 859.3
+1026.53 481.3
+1028.19 1272.4
+1029.62 159.8
+1030.23 115.1
+1031.67 675.0
+1033.11 328.5
+1040.75 569.9
+1046.43 684.6
+1047.56 556.1
+1049.54 679.2
+1050.83 202.0
+1054.96 201.7
+1055.99 329.2
+1058.38 453.5
+1060.15 660.2
+1062.63 255.1
+1064.68 869.2
+1065.92 897.2
+1066.74 382.8
+1067.80 321.4
+1069.53 227.3
+1070.72 378.5
+1073.84 912.5
+1074.89 706.1
+1077.42 2053.0
+1081.71 341.3
+1082.64 775.3
+1087.53 361.5
+1089.81 2140.6
+1090.63 3634.1
+1091.59 1005.0
+1092.44 258.0
+1095.85 305.2
+1096.63 244.4
+1098.64 310.1
+1103.74 898.3
+1104.55 295.0
+1106.49 414.2
+1107.62 19912.3
+1108.60 11504.9
+1109.74 2027.9
+1110.64 666.1
+1111.32 256.0
+1112.70 682.1
+1116.78 1351.0
+1117.92 197.0
+1118.63 656.6
+1121.71 777.5
+1130.83 609.1
+1133.29 618.6
+1134.05 235.4
+1134.72 1351.4
+1135.96 448.8
+1137.96 247.2
+1139.80 68.1
+1147.35 358.6
+1148.43 1030.7
+1149.86 1004.4
+1150.86 1562.3
+1151.77 4737.5
+1152.65 904.7
+1153.40 940.1
+1154.64 1004.3
+1155.88 457.9
+1161.46 256.9
+1162.68 648.5
+1167.73 173.1
+1169.10 568.1
+1176.54 522.9
+1183.83 356.9
+1187.89 589.7
+1188.87 867.7
+1190.62 284.9
+1194.94 748.2
+1198.97 226.2
+1199.70 909.0
+1204.72 1023.0
+1205.75 1904.3
+1206.60 570.3
+1209.87 294.8
+1213.72 210.8
+1214.71 549.4
+1218.30 382.2
+1222.56 2222.2
+1223.67 973.6
+1224.90 1159.9
+1236.89 139.5
+1237.80 86.4
+1240.89 209.0
+1242.04 231.2
+1245.63 477.2
+1248.60 292.1
+1250.90 241.2
+1258.73 1915.9
+1259.84 1370.2
+1260.77 346.6
+1264.19 116.2
+1264.87 666.9
+1271.15 233.5
+1275.95 2237.8
+1276.81 3059.9
+1277.72 1607.5
+1278.74 418.6
+1285.49 561.3
+1287.81 374.6
+1290.71 509.6
+1293.69 45114.2
+1294.72 30144.4
+1295.68 11608.2
+1296.48 296.7
+1299.91 279.8
+1300.91 254.0
+1308.27 409.7
+1308.94 390.1
+1309.61 789.7
+1310.68 115.3
+1313.74 415.4
+1319.81 249.9
+1322.71 350.5
+1360.81 712.2
+1387.66 60.8
+1389.08 385.4
+1394.97 416.9
+1396.13 166.4
+1403.84 429.0
+1404.85 514.8
+1405.68 1268.6
+1407.81 343.8
+1421.63 1608.4
+1422.83 3651.5
+1423.79 2601.8
+1424.90 1284.5
+1440.02 145.6
+1442.08 251.2
+1442.91 456.2
+1451.93 218.1
+1459.69 232.7
+1472.73 339.1
+1505.74 292.4
+1565.08 294.4