Mercurial > repos > jjohnson > spectrast

diff spectrast_params.py @ 4:c9bfe6adb7cd draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit 592d86797e58318bad77de7c7de253056218cd1e-dirty
author jjohnson
date Wed, 25 Jul 2018 14:41:20 -0400
parents 7f02fc51bddf
children 274fdc50169b
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line diff
--- a/spectrast_params.py	Wed Jul 25 10:58:17 2018 -0400
+++ b/spectrast_params.py	Wed Jul 25 14:41:20 2018 -0400
@@ -14,7 +14,8 @@
     'remark',
     'binaryFormat',
     'writeDtaFiles',
-    'writeMgfFiles',
+    'writeMgfFile',
+    'writePAIdent',
     'removeDecoyProteins',
     'plotSpectra',
     'minimumProbabilityToInclude',
@@ -41,10 +42,8 @@
     'refreshDeleteUnmapped',
     'refreshDeleteMultimapped',
     'reannotatePeaks',
-    'minimumNumPeaksToInclude',
     'minimumMRMQ3MZ',
     'maximumMRMQ3MZ',
-    'minimumNumPeaksToInclude',
     'refreshTrypticOnly',
     'minimumNumReplicates',
     'removeDissimilarReplicates',
@@ -84,7 +83,8 @@
     'remark',
     'binaryFormat',
     'writeDtaFiles',
-    'writeMgfFiles',
+    'writeMgfFile',
+    'writePAIdent',
     'removeDecoyProteins',
     'plotSpectra',
     'minimumProbabilityToInclude',
@@ -111,10 +111,8 @@
     'refreshDeleteUnmapped',
     'refreshDeleteMultimapped',
     'reannotatePeaks',
-    'minimumNumPeaksToInclude',
     'minimumMRMQ3MZ',
     'maximumMRMQ3MZ',
-    'minimumNumPeaksToInclude',
     'refreshTrypticOnly',
     'minimumNumReplicates',
     'removeDissimilarReplicates',