Mercurial > repos > jjohnson > spectrast

diff spectrast_import.xml @ 4:c9bfe6adb7cd draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit 592d86797e58318bad77de7c7de253056218cd1e-dirty
author jjohnson
date Wed, 25 Jul 2018 14:41:20 -0400
parents 7f02fc51bddf
children 274fdc50169b
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--- a/spectrast_import.xml	Wed Jul 25 10:58:17 2018 -0400
+++ b/spectrast_import.xml	Wed Jul 25 14:41:20 2018 -0400
@@ -13,7 +13,7 @@
         mkdir -p libdir &&
         spectrast -cN'libdir/library' '$input_name' | tee '$output' &&
         mkdir -p '$output.files_path' &&
-        for i in library.splib library.sptxt library.spidx library.pepidx; do if [ -e outdir/${i} ]; then cp -p outdir/${i} '$output.files_path'; fi; done
+        for i in library.splib library.sptxt library.spidx library.pepidx; do if [ -e outdir/\${i} ]; then cp -p outdir/\${i} '$output.files_path'; fi; done
     ]]></command>
     <inputs>
         <param name="input" type="data" format="ms2,msp,hlf" label="Spectral library ms2, msp, or hlf"