Mercurial > repos > jjohnson > spectrast

diff spectrast_params.py @ 5:274fdc50169b draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit e5b5b15b0a995c8588ff62f92fd0a2329fb7a6a5-dirty
author jjohnson
date Wed, 25 Jul 2018 15:05:34 -0400
parents c9bfe6adb7cd
children
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line diff
--- a/spectrast_params.py	Wed Jul 25 14:41:20 2018 -0400
+++ b/spectrast_params.py	Wed Jul 25 15:05:34 2018 -0400
@@ -203,7 +203,7 @@
         'param_files', nargs='*',
         help='A SpectraST search.params files')
     parser.add_argument(
-        '-m', '--mode', choices=['search','create','filter'],
+        '-m', '--mode', choices=['search', 'create', 'filter'],
         help='')
     parser.add_argument(
         '-o', '--output',
@@ -215,7 +215,8 @@
 
     optpat = re.compile('^([a-z]\w+)\s*[=:]\s*([^=]+)$')
 
-    valid_opts = search_opts if args.mode == 'search' else create_opts if args.mode == 'create' else filter_opts
+    valid_opts = search_opts if args.mode == 'search'\
+        else create_opts if args.mode == 'create' else filter_opts
     valid_params = dict()
 
     # Collect all valid_params
@@ -247,9 +248,9 @@
     # Write valid_params
     for valid_opt in valid_opts:
         if valid_opt in valid_params:
-            print('%s = %s' % (valid_opt, valid_params[valid_opt]), file=output_wtr)
+            print('%s = %s' % (valid_opt, valid_params[valid_opt]),
+                  file=output_wtr)
 
 
 if __name__ == "__main__":
     __main__()
-