|
0
|
1 <macros>
|
|
|
2 <xml name="requirements">
|
|
|
3 <requirements>
|
|
|
4 <requirement type="package" version="4.0">snpEff</requirement>
|
|
|
5 </requirements>
|
|
|
6 </xml>
|
|
|
7 <xml name="stdio">
|
|
|
8 <stdio>
|
|
|
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
|
|
|
10 <exit_code range="1:" level="fatal" description="Error" />
|
|
|
11 </stdio>
|
|
|
12 </xml>
|
|
|
13 <token name="@EXTERNAL_DOCUMENTATION@">
|
|
|
14
|
|
|
15 For details about this tool, please go to:
|
|
|
16 http://snpeff.sourceforge.net/SnpEff_manual.html
|
|
|
17
|
|
|
18 </token>
|
|
|
19 <token name="@CITATION_SECTION@">------
|
|
|
20
|
|
|
21 **Citation**
|
|
|
22
|
|
|
23 For the underlying tool, please cite the following two publications:
|
|
|
24
|
|
|
25 SnpEff citation:
|
|
|
26 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
|
|
|
27
|
|
|
28 SnpSift citation:
|
|
|
29 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.
|
|
|
30
|
|
|
31 </token>
|
|
|
32 </macros>
|
