Mercurial > repos > jjohnson > snpsift_dbnsfp_generic

annotate readme.rst @ 1:1d5943c87eaf default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Dispaly the description field for cached dbNSFP database selection
author Jim Johnson <jj@umn.edu>
date Mon, 10 Nov 2014 14:46:48 -0600
parents a99b93a830d9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
1 These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani.
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
2 It annotates and predicts the effects of variants on genes (such as amino acid changes).
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
3 ( http://snpeff.sourceforge.net/ )
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
4
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
5 This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift.
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
6
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
7 SnpEff citation:
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
8 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
9
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
10 SnpSift citation:
a99b93a830d9 Uploaded
jjohnson
parents:
diff changeset
11 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.