Mercurial > repos > jjohnson > snpsift
diff snpSift_filter.xml @ 7:c29f29a6f26c
Update help
author | Jim Johnson <jj@umn.edu> |
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date | Mon, 25 Jan 2016 17:02:52 -0600 |
parents | 675fa55f5c02 824f78c0d0df |
children | 2f40467536cf |
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--- a/snpSift_filter.xml Fri Jan 08 08:28:51 2016 -0600 +++ b/snpSift_filter.xml Mon Jan 25 17:02:52 2016 -0600 @@ -28,7 +28,7 @@ </command> <inputs> <param format="vcf" name="input" type="data" label="Variant input file in VCF format"/> - <param name="expr" type="text" label="Filter criteria" size="160" help="Need help? See below a few examples." /> + <param name="expr" type="text" label="Filter criteria" help="Need help? See below a few examples." /> <param name="inverse" type="boolean" truevalue="--inverse" falsevalue="" checked="false" label="Inverse filter" help="Show lines that do not match filter expression" /> <conditional name="filtering"> <param name="mode" type="select" label="Filter mode"> @@ -42,12 +42,12 @@ help="appends an ID tag to non-matching entry FILTER "/> <when value="no"/> <when value="yes"> - <param name="filterId" type="text" value="" optional="true" label="ID appended to non-matching (##FILTER tag in header and FILTER VCF field)." size="10" + <param name="filterId" type="text" value="" optional="true" label="ID appended to non-matching (##FILTER tag in header and FILTER VCF field)." help="Default ID is 'SnpSift'"/> </when> </conditional> - <param name="addFilter" type="text" value="" optional="true" label="Add a string to FILTER VCF field if 'expression' is true." size="10"/> - <param name="rmFilter" type="text" value="" optional="true" label="Remove a string from FILTER VCF field if 'expression' is true (and 'str' is in the field)." size="10"/> + <param name="addFilter" type="text" value="" optional="true" label="Add a string to FILTER VCF field if 'expression' is true." /> + <param name="rmFilter" type="text" value="" optional="true" label="Remove a string from FILTER VCF field if 'expression' is true (and 'str' is in the field)." /> </when> </conditional> </inputs> @@ -87,7 +87,7 @@ <test> <param name="input" ftype="vcf" value="test01.vcf"/> - <param name="expr" value="(POS >= 20175) & (POS <= 35549)"/> + <param name="expr" value="(POS >= 20175) & (POS < 35549)"/> <param name="mode" value="entries"/> <output name="output"> <assert_contents>