Mercurial > repos > jjohnson > snpsift
diff readme.rst @ 0:1ae5526db990
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| author | jjohnson |
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| date | Thu, 26 Jun 2014 09:22:13 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Thu Jun 26 09:22:13 2014 -0400 @@ -0,0 +1,11 @@ +These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani. +It annotates and predicts the effects of variants on genes (such as amino acid changes). +( http://snpeff.sourceforge.net/ ) + +This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift. + +SnpEff citation: +"A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process] + +SnpSift citation: +"Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.