Mercurial > repos > jjohnson > snpsift
comparison snpSift_filter.xml @ 9:88f4997ccb02 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 93465571cf180554c3548338a68fa0f1604985dc-dirty
| author | jjohnson |
|---|---|
| date | Mon, 11 Apr 2016 09:31:49 -0400 |
| parents | 2f40467536cf |
| children |
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| 8:2f40467536cf | 9:88f4997ccb02 |
|---|---|
| 31 $expr#slurp | 31 $expr#slurp |
| 32 </configfile> | 32 </configfile> |
| 33 </configfiles> | 33 </configfiles> |
| 34 <inputs> | 34 <inputs> |
| 35 <param format="vcf" name="input" type="data" label="Variant input file in VCF format"/> | 35 <param format="vcf" name="input" type="data" label="Variant input file in VCF format"/> |
| 36 <param name="expr" type="text" label="Filter criteria" help="Need help? See below a few examples." /> | 36 <param name="expr" type="text" label="Filter criteria" help="Need help? See below a few examples." > |
| 37 <sanitizer sanitize="False"/> | |
| 38 </param> | |
| 37 <param name="inverse" type="boolean" truevalue="--inverse" falsevalue="" checked="false" label="Inverse filter" help="Show lines that do not match filter expression" /> | 39 <param name="inverse" type="boolean" truevalue="--inverse" falsevalue="" checked="false" label="Inverse filter" help="Show lines that do not match filter expression" /> |
| 38 <conditional name="filtering"> | 40 <conditional name="filtering"> |
| 39 <param name="mode" type="select" label="Filter mode"> | 41 <param name="mode" type="select" label="Filter mode"> |
| 40 <option value="entries" selected="true">Retain entries that pass filter, remove other entries</option> | 42 <option value="entries" selected="true">Retain entries that pass filter, remove other entries</option> |
| 41 <option value="field">Change the FILTER field, but retain all entries</option> | 43 <option value="field">Change the FILTER field, but retain all entries</option> |