annotate readme.rst @ 9:88f4997ccb02
draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 93465571cf180554c3548338a68fa0f1604985dc-dirty
| author |
jjohnson |
| date |
Mon, 11 Apr 2016 09:31:49 -0400 |
| parents |
1ae5526db990 |
| children |
|
| rev |
line source |
|
0
|
1 These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani.
|
|
|
2 It annotates and predicts the effects of variants on genes (such as amino acid changes).
|
|
|
3 ( http://snpeff.sourceforge.net/ )
|
|
|
4
|
|
|
5 This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift.
|
|
|
6
|
|
|
7 SnpEff citation:
|
|
|
8 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
|
|
|
9
|
|
|
10 SnpSift citation:
|
|
|
11 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.
|
