snpsift: test-data/test01.vcf annotate

annotate test-data/test01.vcf @ 8:2f40467536cf draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 93465571cf180554c3548338a68fa0f1604985dc-dirty

author	jjohnson
date	Sat, 09 Apr 2016 11:53:30 -0400
parents	1ae5526db990
children

rev	line source
0 1ae5526db990 Uploaded jjohnson parents: diff changeset	1 ##fileformat=VCFv4.1
1ae5526db990 Uploaded jjohnson parents: diff changeset	2 ##samtoolsVersion=0.1.16 (r963:234)
1ae5526db990 Uploaded jjohnson parents: diff changeset	3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
1ae5526db990 Uploaded jjohnson parents: diff changeset	4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
1ae5526db990 Uploaded jjohnson parents: diff changeset	5 ##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
1ae5526db990 Uploaded jjohnson parents: diff changeset	6 ##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
1ae5526db990 Uploaded jjohnson parents: diff changeset	7 ##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the site allele frequency of the first ALT allele">
1ae5526db990 Uploaded jjohnson parents: diff changeset	8 ##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
1ae5526db990 Uploaded jjohnson parents: diff changeset	9 ##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
1ae5526db990 Uploaded jjohnson parents: diff changeset	10 ##INFO=<ID=CI95,Number=2,Type=Float,Description="Equal-tail Bayesian credible interval of the site allele frequency at the 95% level">
1ae5526db990 Uploaded jjohnson parents: diff changeset	11 ##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
1ae5526db990 Uploaded jjohnson parents: diff changeset	12 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
1ae5526db990 Uploaded jjohnson parents: diff changeset	13 ##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
1ae5526db990 Uploaded jjohnson parents: diff changeset	14 ##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
1ae5526db990 Uploaded jjohnson parents: diff changeset	15 ##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
1ae5526db990 Uploaded jjohnson parents: diff changeset	16 ##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
1ae5526db990 Uploaded jjohnson parents: diff changeset	17 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
1ae5526db990 Uploaded jjohnson parents: diff changeset	18 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
1ae5526db990 Uploaded jjohnson parents: diff changeset	19 ##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
1ae5526db990 Uploaded jjohnson parents: diff changeset	20 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
1ae5526db990 Uploaded jjohnson parents: diff changeset	21 ##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
1ae5526db990 Uploaded jjohnson parents: diff changeset	22 ##FORMAT=<ID=PL,Number=-1,Type=Integer,Description="List of Phred-scaled genotype likelihoods, number of values is (#ALT+1)*(#ALT+2)/2">
1ae5526db990 Uploaded jjohnson parents: diff changeset	23 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT s_1_BcA2.sort.rmdup.Q20.noMh.bam
1ae5526db990 Uploaded jjohnson parents: diff changeset	24 NT_166464 696 . G C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	25 NT_166464 745 . G C 6.98 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:36,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	26 NT_166464 7258 . A C 40 . DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,2,1;MQ=32;FQ=-4.12;PV4=1,0.28,0.21,0.17 GT:PL:GQ 0/1:70,0,25:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	27 NT_166464 7268 . A G 8.65 . DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,1;MQ=30;FQ=3.32;PV4=1,0.017,0,1 GT:PL:GQ 0/1:38,0,28:32
1ae5526db990 Uploaded jjohnson parents: diff changeset	28 NT_166464 7283 . T C 11.3 . DP=3;AF1=0.501;CI95=0.5,0.5;DP4=1,0,1,1;MQ=30;FQ=-4.81;PV4=1,1,0,1 GT:PL:GQ 0/1:41,0,24:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	29 NT_166464 7335 . G A 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33 GT:PL:GQ 1/1:50,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	30 NT_166464 8030 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	31 NT_166452 8268 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	32 NT_166452 16693 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	33 NT_166480 12474 . G A 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	34 NT_166480 12483 . A G 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	35 NT_166476 578 . C T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	36 NT_166476 22223 . A C 3.01 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,2,0;MQ=32;FQ=4.63;PV4=0.33,0.26,0,0.42 GT:PL:GQ 0/1:30,0,43:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	37 NT_166476 22256 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	38 NT_166476 23076 . A T 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33 GT:PL:GQ 1/1:39,6,0:8
1ae5526db990 Uploaded jjohnson parents: diff changeset	39 NT_166476 23487 . C A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	40 NT_166454 64 . T A 8.64 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,0;MQ=29;FQ=11.3;PV4=0.14,1,1,1 GT:PL:GQ 0/1:38,0,91:40
1ae5526db990 Uploaded jjohnson parents: diff changeset	41 NT_166454 95 . T A 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,1;MQ=29;FQ=12.3;PV4=1,0.19,1,1 GT:PL:GQ 0/1:39,0,101:41
1ae5526db990 Uploaded jjohnson parents: diff changeset	42 NT_166454 1580 . T C 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	43 NT_166454 7132 . A G 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:74,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	44 NT_166454 7142 . T C 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:74,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	45 NT_166454 7181 . C A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:42,6,0:9
1ae5526db990 Uploaded jjohnson parents: diff changeset	46 NT_166454 11670 . C T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:34,6,0:5
1ae5526db990 Uploaded jjohnson parents: diff changeset	47 NT_166454 15049 . A T 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:45,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	48 NT_166454 15052 . TA T 35.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:74,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	49 NT_166454 15373 . C G 30.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:62,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	50 NT_166454 15388 . C G 22.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:54,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	51 NT_166454 15440 . TA T 28.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:67,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	52 NT_166454 18840 . C T 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33 GT:PL:GQ 1/1:37,6,0:7
1ae5526db990 Uploaded jjohnson parents: diff changeset	53 NT_166454 18863 . T C 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33 GT:PL:GQ 1/1:45,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	54 NT_166454 18933 . C T 4.77 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=30;FQ=-3.1;PV4=1,0.032,0,0.31 GT:PL:GQ 0/1:33,0,28:30
1ae5526db990 Uploaded jjohnson parents: diff changeset	55 NT_166454 21433 . G T 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:36,6,0:6
1ae5526db990 Uploaded jjohnson parents: diff changeset	56 NT_166454 21485 . TAAAAA TAAAA 17.5 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5 GT:PL:GQ 1/1:57,9,0:15
1ae5526db990 Uploaded jjohnson parents: diff changeset	57 NT_166481 473 . A C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	58 NT_166481 476 . A T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	59 NT_166481 558 . G C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	60 NT_166481 9526 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	61 NT_166481 10879 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	62 NT_166481 17878 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	63 NT_166481 20402 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	64 NT_166481 20413 . G T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	65 NT_166459 13329 . T G 20.1 . DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=-5.45;PV4=1,0.48,1,0.33 GT:PL:GQ 0/1:50,0,23:26
1ae5526db990 Uploaded jjohnson parents: diff changeset	66 NT_166459 21532 . T C 6.98 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:36,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	67 NT_166473 10619 . T A 4.13 . DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,0,3;MQ=28;FQ=-3.64;PV4=0.25,0.036,0,1 GT:PL:GQ 0/1:32,0,27:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	68 NT_166473 10641 . A T 47.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=28;FQ=-39 GT:PL:GQ 1/1:80,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	69 NT_166461 20175 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	70 NT_166462 4505 . A G 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	71 NT_166462 4585 . C T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	72 NT_166462 25794 . A C 7.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	73 NT_166462 25801 . T G 22.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:54,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	74 NT_166462 25952 . T C 32.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=37;FQ=-45 GT:PL:GQ 1/1:65,18,0:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	75 NT_166462 25967 . T C 135 . DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=37;FQ=-54 GT:PL:GQ 1/1:168,27,0:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	76 NT_166462 26035 . T C 82 . DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=37;FQ=-54 GT:PL:GQ 1/1:115,27,0:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	77 NT_166462 26537 . C G 83.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39 GT:PL:GQ 1/1:116,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	78 NT_166462 26577 . A C 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39 GT:PL:GQ 1/1:62,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	79 NT_166462 26682 . A G 222 . DP=19;AF1=1;CI95=1,1;DP4=0,0,9,9;MQ=30;FQ=-81 GT:PL:GQ 1/1:255,54,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	80 NT_166462 26690 . A G 184 . DP=20;AF1=1;CI95=1,1;DP4=0,0,10,10;MQ=31;FQ=-87 GT:PL:GQ 1/1:217,60,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	81 NT_166462 26717 . A G 207 . DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-57 GT:PL:GQ 1/1:240,30,0:57
1ae5526db990 Uploaded jjohnson parents: diff changeset	82 NT_166462 26722 . T C 98 . DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-57 GT:PL:GQ 1/1:131,30,0:57
1ae5526db990 Uploaded jjohnson parents: diff changeset	83 NT_166462 26762 . CAA CAAA 207 . INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-64.5 GT:PL:GQ 1/1:248,30,0:57
1ae5526db990 Uploaded jjohnson parents: diff changeset	84 NT_166453 185 . A C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	85 NT_166453 198 . T G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	86 NT_166453 264 . T C 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	87 NT_166453 312 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	88 NT_166453 321 . C T 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	89 NT_166453 20370 . G C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	90 NT_166467 12821 . C T 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	91 NT_166338 16706 . C A 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	92 NT_166338 16707 . T A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	93 NT_166338 16708 . C G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	94 NT_166338 16774 . G C 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	95 NT_166442 37512 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	96 NT_166442 37558 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	97 NT_166442 37567 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
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1ae5526db990 Uploaded jjohnson parents: diff changeset	435 19 5415652 . C G 19.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=16.7;PV4=1,0.0019,0.11,1 GT:PL:GQ 0/1:49,0,45:47
1ae5526db990 Uploaded jjohnson parents: diff changeset	436 19 5415658 . A T 35 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=15.1;PV4=1,1,0.11,1 GT:PL:GQ 0/1:65,0,42:45
1ae5526db990 Uploaded jjohnson parents: diff changeset	437 19 5415664 . G A 14.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=16.1;PV4=1,0.0034,0.11,1 GT:PL:GQ 0/1:44,0,50:46
1ae5526db990 Uploaded jjohnson parents: diff changeset	438 19 5423558 . A AT 121 . INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=37;FQ=-61.5 GT:PL:GQ 1/1:162,27,0:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	439 19 5424274 . GG GGAG 46.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,3,4,1;MQ=37;FQ=49.5;PV4=0.52,0.014,1,1 GT:PL:GQ 0/1:84,0,134:87
1ae5526db990 Uploaded jjohnson parents: diff changeset	440 19 5426086 . A C 14.2 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=15,2,0,9;MQ=37;FQ=17.1;PV4=1.8e-05,1.7e-09,1,1 GT:PL:GQ 0/1:44,0,212:47
1ae5526db990 Uploaded jjohnson parents: diff changeset	441 19 5462528 . A AGG 45.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5 GT:PL:GQ 1/1:85,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	442 19 5479300 . C A 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	443 19 5480150 . G A 7.59 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33 GT:PL:GQ 1/1:38,6,0:7
1ae5526db990 Uploaded jjohnson parents: diff changeset	444 19 5533657 . C G 3.55 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:31,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	445 19 5535804 . C T 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	446 19 5580726 . C T 3.02 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:30,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	447 19 5640300 . CA C 77.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,4;MQ=37;FQ=71;PV4=1,0.049,1,0.065 GT:PL:GQ 0/1:115,0,106:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	448 19 5642274 . A G 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,3;MQ=37;FQ=12.3;PV4=1,0.0039,1,0.22 GT:PL:GQ 0/1:39,0,152:41
1ae5526db990 Uploaded jjohnson parents: diff changeset	449 19 5646794 . C CAA 4.42 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,4;MQ=36;FQ=6.56;PV4=0.061,0.00082,0.1,4.2e-05 GT:PL:GQ 0/1:40,0,170:40
1ae5526db990 Uploaded jjohnson parents: diff changeset	450 19 5652568 . T TTC 47.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,4,0;MQ=37;FQ=50.5;PV4=1,0.33,1,0.035 GT:PL:GQ 0/1:85,0,142:88
1ae5526db990 Uploaded jjohnson parents: diff changeset	451 19 5652874 . CT CTT 45.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=36;FQ=34.3;PV4=0.029,0.31,0.22,1 GT:PL:GQ 0/1:83,0,69:72
1ae5526db990 Uploaded jjohnson parents: diff changeset	452 19 5655793 . T TTTG 15.6 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=37;FQ=18.5;PV4=1,0.031,1,0.0029 GT:PL:GQ 0/1:53,0,90:56
1ae5526db990 Uploaded jjohnson parents: diff changeset	453 19 5671522 . C CT 8.18 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,2;MQ=37;FQ=10.8;PV4=0.4,0.24,1,0.028 GT:PL:GQ 0/1:45,0,113:47
1ae5526db990 Uploaded jjohnson parents: diff changeset	454 19 5673355 . C G 16.1 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,1;MQ=37;FQ=18.7;PV4=1,0.012,1,0.00027 GT:PL:GQ 0/1:46,0,56:48
1ae5526db990 Uploaded jjohnson parents: diff changeset	455 19 5673587 . AGCT AGCTTGCT 15.6 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,2,0;MQ=37;FQ=18.5;PV4=0.1,0.4,1,0.18 GT:PL:GQ 0/1:53,0,79:56
1ae5526db990 Uploaded jjohnson parents: diff changeset	456 19 5700971 . GT G 13.7 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=37;FQ=15.4;PV4=0.33,0.057,1,0.00094 GT:PL:GQ 0/1:51,0,56:53
1ae5526db990 Uploaded jjohnson parents: diff changeset	457 19 5722189 . A T 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:47,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	458 19 5747411 . A ATT 28.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:67,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	459 19 5751303 . G GAC 36.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,0;MQ=37;FQ=39.5;PV4=1,1,1,0.0091 GT:PL:GQ 0/1:74,0,110:77
1ae5526db990 Uploaded jjohnson parents: diff changeset	460 19 5765309 . C T 3.02 . DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,2;MQ=37;FQ=-3.6;PV4=0.33,0.14,1,1 GT:PL:GQ 0/1:30,0,28:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	461 19 5766155 . T TCCC 5.8 . INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,2;MQ=37;FQ=-7.54;PV4=0.33,0.044,1,1 GT:PL:GQ 0/1:42,0,28:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	462 19 5802669 . CCT CCTCT 23.5 . INDEL;DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,3,0;MQ=33;FQ=-3.84;PV4=0.4,1,0.11,1 GT:PL:GQ 0/1:61,0,33:36
1ae5526db990 Uploaded jjohnson parents: diff changeset	463 19 5837235 . G A 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	464 19 5853932 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	465 19 5894371 . G T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	466 19 5899740 . A G 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	467 19 5902359 . GT G 20.5 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-43.5 GT:PL:GQ 1/1:60,9,0:15
1ae5526db990 Uploaded jjohnson parents: diff changeset	468 19 5905108 . G C 3.54 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-3.4;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,28:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	469 19 5951787 . C T 18 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36 GT:PL:GQ 1/1:50,9,0:15
1ae5526db990 Uploaded jjohnson parents: diff changeset	470 19 5956115 . CT CTT 20.5 . INDEL;DP=4;AF1=0.501;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-10.9;PV4=1,1,1,0.33 GT:PL:GQ 0/1:58,0,24:27
1ae5526db990 Uploaded jjohnson parents: diff changeset	471 19 5956116 . TA T 20.5 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-7.4;PV4=1,0.24,1,0.31 GT:PL:GQ 0/1:58,0,28:31
1ae5526db990 Uploaded jjohnson parents: diff changeset	472 19 5988978 . AGG AGGGG 95 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=37;FQ=-46.5 GT:PL:GQ 1/1:135,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	473 19 5990457 . G GC 48.5 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,1;MQ=37;FQ=18.5;PV4=1,1,1,0.11 GT:PL:GQ 0/1:86,0,53:56
1ae5526db990 Uploaded jjohnson parents: diff changeset	474 19 5992164 . A T 6.98 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:36,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	475 19 6011296 . CTT CTTT 89 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-46.5 GT:PL:GQ 1/1:129,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	476 19 6047971 . C T 141 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,2,6;MQ=37;FQ=114;PV4=0.58,0.44,1,1 GT:PL:GQ 0/1:171,0,141:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	477 19 6071701 . A T 8.64 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,0;MQ=36;FQ=11.3;PV4=1,0.12,1,1 GT:PL:GQ 0/1:38,0,89:40
1ae5526db990 Uploaded jjohnson parents: diff changeset	478 19 6084061 . CT CTT 14.6 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=37;FQ=16.4;PV4=1,1,1,0.21 GT:PL:GQ 0/1:52,0,57:54
1ae5526db990 Uploaded jjohnson parents: diff changeset	479 19 6116433 . G T 3.01 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1 GT:PL:GQ 0/1:30,0,31:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	480 19 6152712 . A G 34 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-36 GT:PL:GQ 1/1:66,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	481 19 6152741 . T C 191 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=34;FQ=-60 GT:PL:GQ 1/1:224,33,0:63
1ae5526db990 Uploaded jjohnson parents: diff changeset	482 19 6152749 . T C 167 . DP=17;AF1=1;CI95=1,1;DP4=0,0,11,5;MQ=35;FQ=-75 GT:PL:GQ 1/1:200,48,0:93
1ae5526db990 Uploaded jjohnson parents: diff changeset	483 19 6152890 . T C 100 . DP=7;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=37;FQ=-48 GT:PL:GQ 1/1:133,21,0:39
1ae5526db990 Uploaded jjohnson parents: diff changeset	484 19 6152982 . G A 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	485 19 6153036 . C T 55.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=37;FQ=-39 GT:PL:GQ 1/1:88,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	486 19 6153077 . C T 222 . DP=20;AF1=1;CI95=1,1;DP4=0,0,9,11;MQ=37;FQ=-87 GT:PL:GQ 1/1:255,60,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	487 19 6153163 . T C 194 . DP=9;AF1=1;CI95=1,1;DP4=0,0,3,6;MQ=37;FQ=-54 GT:PL:GQ 1/1:227,27,0:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	488 19 6175510 . A G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	489 19 6228939 . CA C 78 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=34;FQ=-46.5 GT:PL:GQ 1/1:118,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	490 19 6230906 . C G 15.1 . DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,0,3;MQ=37;FQ=-4.14;PV4=0.25,0.0037,1,0.1 GT:PL:GQ 0/1:45,0,25:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	491 19 6249082 . T C 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	492 19 6251864 . G GA 28.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:67,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	493 19 6280998 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	494 19 6288939 . C A 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	495 19 6289471 . A G 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:50,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	496 19 6293530 . C T 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	497 19 6294628 . T TCC 70 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-46.5 GT:PL:GQ 1/1:110,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	498 19 6313685 . A G 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=6.98;PV4=1,0.00041,1,0.0011 GT:PL:GQ 0/1:33,0,62:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	499 19 6314781 . G C 44.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=32;FQ=-45 GT:PL:GQ 1/1:77,18,0:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	500 19 6316439 . G GA 11.7 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=33;FQ=-43.5 GT:PL:GQ 1/1:51,9,0:13
1ae5526db990 Uploaded jjohnson parents: diff changeset	501 19 6322372 . G GC 10.6 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:49,6,0:9
1ae5526db990 Uploaded jjohnson parents: diff changeset	502 19 6355840 . C CAG 11.8 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=37;FQ=14.6;PV4=1,1,1,0.45 GT:PL:GQ 0/1:49,0,85:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	503 19 6363411 . G A 6.98 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:36,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	504 19 6365792 . G GT 47.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,3,4,1;MQ=37;FQ=50.5;PV4=1,0.08,1,0.055 GT:PL:GQ 0/1:85,0,201:88
1ae5526db990 Uploaded jjohnson parents: diff changeset	505 19 6365797 . A C 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=6,3,4,0;MQ=37;FQ=6.2;PV4=0.5,5.7e-06,1,0.1 GT:PL:GQ 0/1:32,0,196:31
1ae5526db990 Uploaded jjohnson parents: diff changeset	506 19 6372298 . T C 18 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36 GT:PL:GQ 1/1:50,9,0:15
1ae5526db990 Uploaded jjohnson parents: diff changeset	507 19 6372626 . G GCC 16.6 . INDEL;DP=8;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,3,0;MQ=37;FQ=-9.99;PV4=1,0.061,1,0.0096 GT:PL:GQ 0/1:54,0,25:28
1ae5526db990 Uploaded jjohnson parents: diff changeset	508 19 6374284 . G A 13.2 . DP=7;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,3,1;MQ=33;FQ=-6.21;PV4=0.4,0.012,0.25,1 GT:PL:GQ 0/1:43,0,22:25
1ae5526db990 Uploaded jjohnson parents: diff changeset	509 19 6374286 . A C 4.13 . DP=7;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,3,0;MQ=34;FQ=-4.62;PV4=0.25,0.031,0.33,1 GT:PL:GQ 0/1:32,0,25:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	510 19 6386021 . T TGGC 11.8 . INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,2;MQ=33;FQ=-7.43;PV4=0.33,0.44,0.33,0.33 GT:PL:GQ 0/1:49,0,28:32
1ae5526db990 Uploaded jjohnson parents: diff changeset	511 19 6390455 . C A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	512 19 6502037 . T G 3.55 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:31,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	513 19 6592212 . A G 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33 GT:PL:GQ 1/1:36,6,0:6
1ae5526db990 Uploaded jjohnson parents: diff changeset	514 19 6642108 . C T 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	515 19 6905075 . A AGC 7.98 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:46,6,0:8
1ae5526db990 Uploaded jjohnson parents: diff changeset	516 19 6909201 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
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1ae5526db990 Uploaded jjohnson parents: diff changeset	719 19 10669900 . TC TCC 21.5 . INDEL;DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,2,0;MQ=37;FQ=-11.8;PV4=0.33,1,1,0.027 GT:PL:GQ 0/1:59,0,23:26
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1ae5526db990 Uploaded jjohnson parents: diff changeset	727 19 10701724 . AGG AG 19.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,1;MQ=37;FQ=22.5;PV4=0.46,0.32,1,0.0032 GT:PL:GQ 0/1:57,0,130:60
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1ae5526db990 Uploaded jjohnson parents: diff changeset	739 19 11165572 . A G 222 . DP=16;AF1=1;CI95=1,1;DP4=0,0,10,6;MQ=37;FQ=-75 GT:PL:GQ 1/1:255,48,0:93
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1ae5526db990 Uploaded jjohnson parents: diff changeset	742 19 11165712 . A G 57.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=37;FQ=-42 GT:PL:GQ 1/1:90,15,0:27
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1ae5526db990 Uploaded jjohnson parents: diff changeset	744 19 11196544 . C T 141 . DP=19;AF1=1;CI95=1,1;DP4=0,0,7,11;MQ=37;FQ=-81 GT:PL:GQ 1/1:174,54,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	745 19 11196769 . A G 174 . DP=23;AF1=1;CI95=1,1;DP4=0,0,6,15;MQ=37;FQ=-90 GT:PL:GQ 1/1:207,63,0:99
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1ae5526db990 Uploaded jjohnson parents: diff changeset	747 19 11465876 . C T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	748 19 11467556 . ATGTGTGTGTGTGTGT ATGTGTGTGTGTGT 216 . INDEL;DP=92;AF1=0.5;CI95=0.5,0.5;DP4=19,27,6,22;MQ=37;FQ=217;PV4=0.13,0.00092,0.36,1 GT:PL:GQ 0/1:254,0,255:99
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1ae5526db990 Uploaded jjohnson parents: diff changeset	750 19 11489280 . A T 13 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33 GT:PL:GQ 1/1:44,6,0:9
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1ae5526db990 Uploaded jjohnson parents: diff changeset	753 19 11546250 . A G 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	754 19 11583902 . A C 3.54 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=-3.07;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,29:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	755 19 11593164 . G GCC 121 . INDEL;DP=16;AF1=1;CI95=0.5,1;DP4=1,0,15,0;MQ=36;FQ=-45.5;PV4=1,1,0.36,0.34 GT:PL:GQ 1/1:161,11,0:19
1ae5526db990 Uploaded jjohnson parents: diff changeset	756 19 11593167 . A G 32 . DP=16;AF1=1;CI95=0.5,1;DP4=1,0,10,0;MQ=37;FQ=-30;PV4=1,0.0089,1,1 GT:PL:GQ 1/1:62,3,0:6
1ae5526db990 Uploaded jjohnson parents: diff changeset	757 19 11632363 . A AGT 45.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37;FQ=-43.5 GT:PL:GQ 1/1:85,9,0:16
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1ae5526db990 Uploaded jjohnson parents: diff changeset	781 19 11952283 . T C 165 . DP=38;AF1=1;CI95=1,1;DP4=0,0,14,21;MQ=35;FQ=-132 GT:PL:GQ 1/1:198,105,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	782 19 11952293 . A G 222 . DP=45;AF1=1;CI95=1,1;DP4=0,0,19,25;MQ=34;FQ=-159 GT:PL:GQ 1/1:255,132,0:99
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1ae5526db990 Uploaded jjohnson parents: diff changeset	784 19 11952357 . T C 39.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=32;FQ=-45 GT:PL:GQ 1/1:72,18,0:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	785 19 11952381 . C T 82.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=36;FQ=-48 GT:PL:GQ 1/1:115,21,0:39
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1ae5526db990 Uploaded jjohnson parents: diff changeset	787 19 11952453 . T C 88.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=37;FQ=-42 GT:PL:GQ 1/1:121,15,0:27
1ae5526db990 Uploaded jjohnson parents: diff changeset	788 19 11952566 . C G 112 . DP=9;AF1=1;CI95=1,1;DP4=0,0,5,4;MQ=37;FQ=-54 GT:PL:GQ 1/1:145,27,0:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	789 19 11952602 . C T 186 . DP=21;AF1=1;CI95=1,1;DP4=0,0,12,9;MQ=37;FQ=-90 GT:PL:GQ 1/1:219,63,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	790 19 11952628 . CTCTTCT CTCT 15.6 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=10,13,3,1;MQ=37;FQ=18.5;PV4=0.33,1,1,1 GT:PL:GQ 0/1:53,0,255:56
1ae5526db990 Uploaded jjohnson parents: diff changeset	791 19 11952659 . A C 172 . DP=21;AF1=1;CI95=1,1;DP4=0,0,9,12;MQ=37;FQ=-90 GT:PL:GQ 1/1:205,63,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	792 19 11952675 . T C 178 . DP=17;AF1=1;CI95=1,1;DP4=0,0,8,8;MQ=37;FQ=-75 GT:PL:GQ 1/1:211,48,0:93
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1ae5526db990 Uploaded jjohnson parents: diff changeset	794 19 11952712 . AGCTGCTGCTGCTGC AGCTGCTGCTGCTGCTGC 99.6 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=37;FQ=-52.5 GT:PL:GQ 1/1:140,18,0:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	795 19 11952805 . A G 198 . DP=21;AF1=1;CI95=1,1;DP4=0,0,8,12;MQ=37;FQ=-87 GT:PL:GQ 1/1:231,60,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	796 19 11952841 . T G 191 . DP=24;AF1=1;CI95=1,1;DP4=0,0,16,7;MQ=36;FQ=-96 GT:PL:GQ 1/1:224,69,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	797 19 11952882 . A C 140 . DP=28;AF1=1;CI95=1,1;DP4=0,0,22,6;MQ=34;FQ=-111 GT:PL:GQ 1/1:173,84,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	798 19 11952895 . A G 104 . DP=25;AF1=1;CI95=1,1;DP4=0,0,21,1;MQ=34;FQ=-93 GT:PL:GQ 1/1:137,66,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	799 19 11997967 . G C 6.98 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=33;FQ=3.2;PV4=1,0.019,0.33,1 GT:PL:GQ 0/1:36,0,28:31
1ae5526db990 Uploaded jjohnson parents: diff changeset	800 19 12033202 . G A 27 . DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,1,2;MQ=28;FQ=-4.12;PV4=1,0.048,0,0.22 GT:PL:GQ 0/1:57,0,25:28
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1ae5526db990 Uploaded jjohnson parents: diff changeset	817 19 12979639 . A T 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
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1ae5526db990 Uploaded jjohnson parents: diff changeset	828 19 13670153 . A G 30 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36 GT:PL:GQ 1/1:62,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	829 19 13670161 . G A 27 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36 GT:PL:GQ 1/1:59,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	830 19 14007582 . C A 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:33,6,0:5
1ae5526db990 Uploaded jjohnson parents: diff changeset	831 19 14007612 . AAGAGAG AAGAG 28.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:67,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	832 19 14070075 . T A 3.55 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:31,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	833 19 14524333 . TAG T 14.6 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=-7.41;PV4=1,1,1,0.39 GT:PL:GQ 0/1:52,0,28:31
1ae5526db990 Uploaded jjohnson parents: diff changeset	834 19 14527043 . T A 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	835 19 14580308 . T A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	836 19 14592466 . GC GCCC 22.2 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:61,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	837 19 14607703 . T C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	838 19 15533970 . T C 51 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=30;FQ=-36 GT:PL:GQ 1/1:83,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	839 19 15533994 . A G 45.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=32;FQ=-39 GT:PL:GQ 1/1:78,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	840 19 15534018 . A G 42.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=32;FQ=-39 GT:PL:GQ 1/1:75,12,0:21
1ae5526db990 Uploaded jjohnson parents: diff changeset	841 19 15647552 . C A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	842 19 16143433 . T G 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	843 19 16143436 . A C 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
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1ae5526db990 Uploaded jjohnson parents: diff changeset	846 19 16298173 . C A 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
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1ae5526db990 Uploaded jjohnson parents: diff changeset	955 19 24439851 . C G 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	956 19 25085208 . C T 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	957 19 25088621 . A C 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	958 19 25152568 . AG A 13.4 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:52,6,0:9
1ae5526db990 Uploaded jjohnson parents: diff changeset	959 19 25176862 . C T 3.55 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:31,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	960 19 25202314 . G T 3.57 . DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-10.6;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,17:23
1ae5526db990 Uploaded jjohnson parents: diff changeset	961 19 25264826 . T A 6.2 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:35,3,0:4
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1ae5526db990 Uploaded jjohnson parents: diff changeset	963 19 25568441 . G A 89 . DP=10;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=29;FQ=-57 GT:PL:GQ 1/1:122,30,0:57
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1ae5526db990 Uploaded jjohnson parents: diff changeset	967 19 25568536 . A G 13.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36 GT:PL:GQ 1/1:45,9,0:14
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1ae5526db990 Uploaded jjohnson parents: diff changeset	970 19 26728829 . AGG ATGG,AG 8.83 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-40.5 GT:PL:GQ 1/1:71,30,24,46,0,43:8
1ae5526db990 Uploaded jjohnson parents: diff changeset	971 19 26747187 . AGG AG 14.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	972 19 26751288 . G GAC 116 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=35;FQ=-52.5 GT:PL:GQ 1/1:156,18,0:33
1ae5526db990 Uploaded jjohnson parents: diff changeset	973 19 26756358 . CA CAAA 11.8 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=14.4;PV4=1,0.41,1,0.0024 GT:PL:GQ 0/1:49,0,62:51
1ae5526db990 Uploaded jjohnson parents: diff changeset	974 19 26758413 . GT GTT 52.4 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-43.5 GT:PL:GQ 1/1:92,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	975 19 26764380 . C T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33 GT:PL:GQ 1/1:44,6,0:9
1ae5526db990 Uploaded jjohnson parents: diff changeset	976 19 26765941 . AGG AGGGG 24.2 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:63,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	977 19 26780556 . A AC 18.3 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-40.5 GT:PL:GQ 1/1:57,6,0:10
1ae5526db990 Uploaded jjohnson parents: diff changeset	978 19 26787476 . G A 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
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1ae5526db990 Uploaded jjohnson parents: diff changeset	980 19 26803281 . G T 7.8 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 1/1:37,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	981 19 26827257 . G A 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	982 19 26847473 . A C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33 GT:PL:GQ 1/1:41,6,0:8
1ae5526db990 Uploaded jjohnson parents: diff changeset	983 19 26852064 . TACACACACACACACACACACACACACACACACACACACA TACACACACACACACACACACACACACACACACACACA 118 . INDEL;DP=55;AF1=0.5;CI95=0.5,0.5;DP4=8,10,4,6;MQ=37;FQ=121;PV4=1,1,1,1 GT:PL:GQ 0/1:156,0,255:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	984 19 27313337 . G A 3.41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33 GT:PL:GQ 1/1:32,6,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	985 19 27314462 . T C 40 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36 GT:PL:GQ 1/1:72,9,0:16
1ae5526db990 Uploaded jjohnson parents: diff changeset	986 19 27466173 . C G 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,31:29
1ae5526db990 Uploaded jjohnson parents: diff changeset	987 19 28220602 . T G 222 . DP=21;AF1=1;CI95=1,1;DP4=0,0,8,13;MQ=37;FQ=-90 GT:PL:GQ 1/1:255,63,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	988 19 28220622 . C T 222 . DP=21;AF1=1;CI95=1,1;DP4=0,0,8,13;MQ=37;FQ=-90 GT:PL:GQ 1/1:255,63,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	989 19 28220668 . G A 222 . DP=13;AF1=1;CI95=1,1;DP4=0,0,5,6;MQ=36;FQ=-60 GT:PL:GQ 1/1:255,33,0:63
1ae5526db990 Uploaded jjohnson parents: diff changeset	990 19 28220691 . T C 148 . DP=7;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=36;FQ=-48 GT:PL:GQ 1/1:181,21,0:39
1ae5526db990 Uploaded jjohnson parents: diff changeset	991 19 28486996 . T C 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	992 19 28643319 . C T 3.55 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:31,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	993 19 28643329 . C T 4.77 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30 GT:PL:GQ 0/1:33,3,0:3
1ae5526db990 Uploaded jjohnson parents: diff changeset	994 19 28714335 . C A 6.98 . DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30 GT:PL:GQ 1/1:36,3,0:4
1ae5526db990 Uploaded jjohnson parents: diff changeset	995 19 28837706 . A T 154 . DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=25;FQ=-66 GT:PL:GQ 1/1:187,39,0:75
1ae5526db990 Uploaded jjohnson parents: diff changeset	996 19 28837717 . G A 154 . DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=25;FQ=-66 GT:PL:GQ 1/1:187,39,0:75
1ae5526db990 Uploaded jjohnson parents: diff changeset	997 19 28837735 . A G 154 . DP=24;AF1=1;CI95=1,1;DP4=0,0,7,14;MQ=25;FQ=-90 GT:PL:GQ 1/1:187,63,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	998 19 28837767 . A G,T 177 . DP=53;AF1=1;CI95=1,1;DP4=0,0,21,29;MQ=30;FQ=-175 GT:PL:GQ 1/1:210,148,0,204,125,201:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	999 19 28837787 . C T 161 . DP=66;AF1=1;CI95=1,1;DP4=0,1,30,35;MQ=31;FQ=-206;PV4=1,1,1,1 GT:PL:GQ 1/1:194,179,0:99
1ae5526db990 Uploaded jjohnson parents: diff changeset	1000 19 28837805 . A G 222 . DP=54;AF1=1;CI95=1,1;DP4=0,0,26,26;MQ=32;FQ=-184 GT:PL:GQ 1/1:255,157,0:99

Mercurial > repos > jjohnson > snpsift

annotate test-data/test01.vcf @ 8:2f40467536cf draft