Mercurial > repos > jjohnson > snpeff_with_dep

changeset 15:bd23bbee9883

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Fix SnpSift dependency
author Jim Johnson <jj@umn.edu>
date Fri, 21 Sep 2012 16:06:58 -0500
parents ef4598ea7179
children 24c77a318a0f
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 21 16:00:25 2012 -0500
+++ b/tool_dependencies.xml	Fri Sep 21 16:06:58 2012 -0500
@@ -24,11 +24,18 @@
         <install version="1.0">
             <actions>
                 <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
                 <action type="set_environment">
                     <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable>
                 </action>
             </actions>
         </install>
+        <readme>
+        </readme>
+    </package>
 
 </tool_dependency>