Mercurial > repos > jjohnson > snpeff_with_dep
changeset 9:38b3a6b97bd1
Add src dir snpEff_3_0 to move_file in tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 14 Sep 2012 14:48:54 -0500 |
| parents | 1562bb333568 |
| children | 9cd24981dbd2 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Sep 14 14:18:55 2012 -0500 +++ b/tool_dependencies.xml Fri Sep 14 14:48:54 2012 -0500 @@ -8,21 +8,21 @@ <actions> <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action> <action type="move_file"> - <source>SnpSift.jar</source> + <source>snpEff_3_0/SnpSift.jar</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> - <source>snpEff.jar</source> + <source>snpEff_3_0/snpEff.jar</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>snpEff_3_0/snpEff.config</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_directory_files"> - <source_directory>scripts</source_directory> + <source_directory>snpEff_3_0/scripts</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> - <action type="move_file"> - <source>snpEff.config</source> - <destination>$INSTALL_DIR/bin</destination> - </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action>