Mercurial > repos > jjohnson > snpeff_with_dep

diff snpSift_annotate.xml @ 1:ebe280eca4a4

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Add package requirement
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 21:40:44 -0500
parents 388f178f9e13
children c641d515de2e
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line diff
--- a/snpSift_annotate.xml	Thu Sep 13 22:33:33 2012 -0400
+++ b/snpSift_annotate.xml	Thu Sep 13 21:40:44 2012 -0500
@@ -5,6 +5,7 @@
 		You can change the amount of memory used, just change the -Xmx parameter (e.g. use -Xmx2G for 2Gb of memory)
 	-->
 	<requirements>
+		<requirement type="package" version="3.0f">snpEff</requirement>
 		<requirement type="set_environment">JAVA_JAR_PATH </requirement>
 	</requirements>
 	<command>java -Xmx6G -jar $JAVA_JAR_PATH/SnpSift.jar annotate -q $dbSnp $input > $output </command>