Mercurial > repos > jjohnson > snpeff_with_dep
diff snpEff.xml @ 1:ebe280eca4a4
Add package requirement
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 13 Sep 2012 21:40:44 -0500 |
| parents | 388f178f9e13 |
| children | c641d515de2e |
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--- a/snpEff.xml Thu Sep 13 22:33:33 2012 -0400 +++ b/snpEff.xml Thu Sep 13 21:40:44 2012 -0500 @@ -6,6 +6,7 @@ <command>java -Xmx6G -jar /path/to/your/snpEff/snpEff.jar eff -c /path/to/your/snpEff/snpEff/snpEff.config $inputFormat $offset -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command> --> <requirements> + <requirement type="package" version="3.0f">snpEff</requirement> <requirement type="set_environment">JAVA_JAR_PATH </requirement> </requirements> <command>java -Xmx6G -jar $JAVA_JAR_PATH/snpEff.jar eff -c $JAVA_JAR_PATH/snpEff.config -i $inputFormat -o $outputFormat -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command>