Mercurial > repos > jjohnson > snpeff_with_dep
diff snpEff.xml @ 11:e9e4ff80e72b
Release version 3.0
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 18 Sep 2012 09:28:08 -0500 |
| parents | c641d515de2e |
| children | ef4598ea7179 |
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--- a/snpEff.xml Tue Sep 18 08:36:28 2012 -0500 +++ b/snpEff.xml Tue Sep 18 09:28:08 2012 -0500 @@ -6,7 +6,7 @@ <command>java -Xmx6G -jar /path/to/your/snpEff/snpEff.jar eff -c /path/to/your/snpEff/snpEff/snpEff.config $inputFormat $offset -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command> --> <requirements> - <requirement type="package" version="3.0f">snpEff</requirement> + <requirement type="package" version="3.0">snpEff</requirement> <requirement type="set_environment">JAVA_JAR_PATH </requirement> </requirements> <command>java -Xmx6G -jar $JAVA_JAR_PATH/snpEff.jar eff -c $JAVA_JAR_PATH/snpEff.config -i $inputFormat -o $outputFormat -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command>